KEGG   Sarcophilus harrisii (Tasmanian devil): 100919645
Entry
100919645         CDS       T02286                                 
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6
  KO
K08737  DNA mismatch repair protein MSH6
Organism
shr  Sarcophilus harrisii (Tasmanian devil)
Pathway
shr01524  Platinum drug resistance
shr03430  Mismatch repair
shr05200  Pathways in cancer
shr05210  Colorectal cancer
Brite
KEGG Orthology (KO) [BR:shr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    100919645 (MSH6)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    100919645 (MSH6)
  09162 Cancer: specific types
   05210 Colorectal cancer
    100919645 (MSH6)
  09176 Drug resistance: antineoplastic
   01524 Platinum drug resistance
    100919645 (MSH6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:shr03400]
    100919645 (MSH6)
DNA repair and recombination proteins [BR:shr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     100919645 (MSH6)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I PWWP MutS_IV MutS_II MUM1-like_PWWP
Other DBs
NCBI-GeneID: 100919645
NCBI-ProteinID: XP_031806307
Ensembl: ENSSHAG00000008029
Position
2:88520669..88555149
AA seq 1399 aa
MSRQSTLFSFFPKSPALCSNNKAAAIAADGSGAGAGAGASGIEGVGRAGVSGASSACGDA
ARSEEARPSPDPAAASGPGPHVPSPRSSSGVAPLPREIKLNGGPRRRPTGVPTPAPAPAA
AAPPASSCDFSPGDLVWAKMEGYPWWPCLVYNHPTEGTFIRERGKTFRVHVQFFDDNPVR
GWVNKRLVKPYTGSKCKEAQKGGPFYTAKPEILRAMQLADDAISIEKNKRLELAVCDEPS
DPDEEEMEVALASASDNSGEDLESEEEVRPKRQMAKRSTARNKKMRVVSDSESDIGGSDV
EFKPDTKEEGSSDEASSGMGESDSDMDSPVKAAPKRKRGTAVNSSLKRKSLGGCTSNVPK
RVVGVSSETKNTLNAFSAPQNFEAQAQVSGGGDGSCGSTQWYHETLEWLKEGKRKDACRR
RPDHPDYDPNTVHVPEDFLNTCTPGMRRWWQIKSQNFDLVIFYKVGKFYELYHMDAIIGV
NELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKLTHISR
FDRVVRREICRIITKGTQTYSVLDGEPSESNNKYLLCVKEKEEEASGHMRLYGVCFIDTS
VGKFYMGQFSDDRHCSRFRTLVAHYTPAQILFEKGNLSAETRKVLKVSLSSSIQESLTPG
SQFWDAAKTLRTLLEEGYFKEKLNVADGVVLPPVLKSMTSESDSIGLTPNEKSELALSAL
GGCVFYLKKCLIDYELLSMANFEEYIPVDADMVKAVKPGAIFGKRDCRMVLDAVTLSNLE
ILQNAVNGSTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPSSINDRLDAMEDLMAVPDK
ISEVVDLLKKLPDLERLLNKIHSVGSPLKSQKHPDSRAIMYEETTYSKKKIVDFLSALEG
FKVMCKIVGIMEEVVGNFKSKILKQVITLRTQNSGGRFPELTTELNRWDTAFDHEKARKT
GIITPKTGFDSDYDQALVDIKDNEQSLLDYLEKQRKRIGCRSIVYWGVGKNRYQLEIPES
FTLHDLPGEYELKSTKKGCKRYWTKDIEKKLADLMNAEERRDVSLKDCMRRLFFNFDKNY
RDWQTAVECIAVFDVLLCLANYSRGGEGPMCRPVILVPDEETRPFLKLKGSRHPCVTNNF
FGDDFIPNDIMIGCKEEDSEDSTWDAYCVLVTGPNMGGKSTLMRQAGLLLIMAQMGCYVP
AEVCSFTPVDRVFTRLGASDRIMSGESTFFVEMNETASILQHATEHSLVLMDELGRGTAT
FDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVCLGHMACMVENECEDPSQE
TITFLYKFTKGACPKSYGFNAARLACLPEEIIQKGHRKAKEFEKMTQSLRLFREVCLALE
NSAADVQAIHKLLTLIKEI
NT seq 4200 nt   +upstreamnt  +downstreamnt
atgtcgcgacagagcaccctattcagcttcttccccaagagcccggcgctgtgcagcaac
aacaaggccgccgccattgctgcggatggaagcggcgctggggctggagcgggggcttcg
gggattgagggggtggggcgggccggagtctccggggcctcgtcggcttgcggagacgcg
gcccggagcgaagaagcccgcccgagtcctgaccctgctgctgcctcaggccccggccct
cacgtccccagcccccgctccagctccggggtcgccccgctgccccgagagataaaactg
aatggagggccgcgccggcgaccgactggagtgccgaccccggctccagccccagccgcg
gctgctcctccagccagctcttgtgacttctctcctggtgatttggtttgggccaagatg
gaaggttacccctggtggccttgccttgtgtataatcatcccactgaaggaacattcatc
agagaaaggggaaaaactttccgtgttcatgtacaattttttgatgacaatccagtgagg
ggctgggttaacaaaaggcttgtaaagccctatacaggttcaaaatgtaaggaagcccag
aaaggaggtcctttttatactgcaaagcctgaaatactcagagcaatgcaactggcagat
gatgccataagtatagagaagaataagcggcttgaattagcagtatgtgatgagccttca
gatccagatgaggaggagatggaggtggctctagcttctgcatcagataatagtggagag
gatctagaaagtgaagaggaagtgagacccaagaggcagatggctaagcgtagcacagcc
cggaacaaaaaaatgagagttgtttcagactcggagagtgacattggtggctctgatgta
gaatttaagccagataccaaggaggaagggagcagtgatgaagcaagcagtggaatgggt
gaaagtgatagtgacatggacagtcctgtcaaagctgccccaaaacggaagagaggaact
gctgtcaacagctccctcaagaggaaaagcttgggaggttgtacttctaatgtacccaaa
cgagtagtaggagtttcttcagaaactaagaacactttgaatgctttctctgctccacag
aactttgaggcccaagcccaagtcagtggaggtggtgatgggagctgtggctctactcag
tggtaccatgaaacactagaatggttaaaggagggaaagaggaaagatgcatgcaggagg
cgtccagatcatcctgattatgacccaaacactgttcatgttcctgaggatttccttaat
acctgtactccaggaatgagaaggtggtggcaaatcaagtctcagaactttgacctagta
atcttctataaagtagggaagttctatgaactataccacatggatgcaatcattggggtc
aatgagctggggctagtgtttatgaaaggcaattgggcccattcaggcttcccagaaatt
gcatttggtagatactctgattccctggttcagaagggttacaaagttgctcgagttgag
cagacagagactcctgaaatgatggaagctcgctgtcgaaagttgactcatatatccaga
tttgatagagtggtgcggagagaaatatgcagaattattaccaagggaacacagacttat
agtgtgctggatggtgaaccttctgaaagcaacaataagtatttgctatgtgttaaagaa
aaagaggaggaagcttctggtcacatgcgtttatatggtgtttgctttatcgacacctcc
gtgggcaagttttatatgggtcaattttcagatgaccgtcattgctcccgatttaggact
ctggtggcacattatactcctgcacaaatactgtttgagaaaggaaatctctctgctgaa
acaaggaaggttctgaaggtgtctctatcttcttccattcaagaaagtctgactccaggc
tctcagttttgggatgcagccaaaaccttgagaacactccttgaagaaggatactttaaa
gaaaagctaaatgtggctgatggggtagtattaccccctgtgcttaaaagcatgacatca
gagtctgactccattggcttaacacctaatgagaagagtgaactggcattgtctgctttg
ggtggttgtgtcttctacctcaaaaaatgccttatcgattatgagcttttgtctatggcc
aactttgaagaatacattcctgttgatgctgatatggtaaaagctgtaaagcctggtgcc
atctttggtaagagagattgtcgaatggtactagatgctgtgaccctcagcaacctggag
attctccagaatgcagtaaatggctccactgaagggacgctgttagagaggattgatagt
tgctgtactccctttgggaagcggctcctaaaacagtggctttgtgctccactttgtaac
ccatcctcaatcaatgaccgtttagatgcaatggaagatctcatggctgtgcctgacaag
attagtgaagtagttgaccttctgaagaagcttccagaccttgagagactgttgaacaag
attcatagtgttggctctccactaaagagtcagaagcacccagacagcagagccataatg
tatgaagaaaccacttacagcaaaaaaaagattgttgatttcttgtctgctctggaagga
ttcaaagtgatgtgcaagattgttggaattatggaagaagtagtaggtaatttcaagtct
aaaatccttaagcaagttattacactccggactcaaaattcggggggtcgtttccctgag
ttgaccacagaattgaatcgatgggatacagcctttgaccatgaaaaagctcgaaagact
ggaattattactcctaaaacaggatttgattctgattatgaccaagcattggttgatatt
aaggacaatgagcagagccttttagactatttagagaaacagcgtaaacggattggctgc
aggtccatagtctattggggtgttggcaaaaatcgttaccaattggaaattccagaaagt
ttcacattgcatgatttgccaggggaatatgaactaaagtccaccaagaagggctgtaaa
cgatactggacaaaggacattgagaagaagcttgctgatttgatgaatgctgaagagcgg
agagatgtatcactgaaggattgtatgaggagactcttctttaattttgataaaaattac
agggactggcagactgctgtggagtgcattgcagtgttcgatgtcttactatgcttggcc
aactatagtcgaggtggtgaaggtcccatgtgtcgtccagtaatcctagtaccagacgag
gagactcgaccctttttaaagcttaaaggatcccgacatccatgtgttacaaataacttt
tttggtgatgattttattcctaatgacattatgataggctgtaaggaagaagattcggaa
gatagtacctgggatgcttattgtgtgctggttactggaccaaatatggggggcaaatca
accctcatgagacaggctggtcttttgcttataatggctcagatgggctgttatgttcct
gctgaagtttgtagtttcacaccagttgatagagtgttcactagattaggtgcttcagac
agaataatgtcaggtgaaagtaccttttttgttgaaatgaatgagactgccagcatacta
cagcatgcaacagaacattccttggtgctcatggatgaactaggtagaggcactgcaact
tttgatggtacagctatagcaaatgcagttgttaaagaacttgccgagaccataaagtgt
cgtactttattttctacacactaccattcattagtagaggattactcccaaaatgttgct
gtgtgcctaggacacatggcatgcatggttgaaaatgaatgtgaagacccaagccaggaa
accattaccttcctctataaatttactaaaggtgcttgtcctaaaagctatggcttcaat
gcagcaaggcttgcctgtcttcctgaagagattattcagaaaggccataggaaagcaaaa
gaatttgagaagatgacccaatcattgagactatttcgggaagtttgtttggctcttgaa
aattcagctgcagatgtccaggctattcacaagttgttgactttgatcaaggaaatataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (48)   

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