KEGG   Sarcophilus harrisii (Tasmanian devil): 100931522
Entry
100931522         CDS       T02286                                 
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
shr  Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:shr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100931522 (CLP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:shr03019]
    100931522 (CLP1)
Enzymes [BR:shr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     100931522 (CLP1)
Messenger RNA biogenesis [BR:shr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     100931522 (CLP1)
SSDB
Motif
Pfam: CLP1_P CLP1_N Clp1 ATP_bind_1 AAA_18 MMR_HSR1 AAA_16 AAA_22 TniB CbiA nSTAND3
Other DBs
NCBI-GeneID: 100931522
NCBI-ProteinID: XP_012408143
Ensembl: ENSSHAG00000015695
Position
6:complement(248803268..248819929)
AA seq 426 aa
MAEESNDEKKPLTKFELERETELRFEVEASQSAQLELLAGMAEIFGTELTRNKKFTFDAG
AKVAVFTWHGCSLQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEREEERGPRVMVV
GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRREYRDER
IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTAEGTEENISETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR
FMDLKR
NT seq 1281 nt   +upstreamnt  +downstreamnt
atggcagaagaatccaatgatgaaaagaagccactgactaaattcgaattagaacgggag
acagaactgcgttttgaggtggaggcttcgcagtcagcccagctggagctcctggccggc
atggccgagatctttggcacagaactgacccgaaacaaaaagttcacttttgatgcaggt
gccaaagttgctgtcttcacttggcatgggtgttctctccagctgagtgggcgcaccgag
gtggcttatgtctccaaggacacacccatgctcctttatcttaacactcacacggccctg
gagcagatgagacggcaagcagagcgtgaggaagagcgaggtcctcgagtgatggtagtc
ggccccacggacgtgggcaagtccacagtatgccgccttttactcaattatgctgtgcga
ctaggccggcggcccacctatgtggagctggatgtaggtcaaggctctgtgtccattcct
ggaaccatgggagctctttacattgagcgacccgctgatgtagaggagggcttctctatc
caggctcctctggtctatcattttggctccactacacctggtaccaacatcaagctttac
aataagattacatcccgactggcagatgtcttcaatcaacgctgtgaggtgaaccgtcga
gcctctgtcagtggctgtgtcattaacacctgtgggtgggtcaagggctctggttaccag
gccttggtgcatgctgcttctgcttttgaggtggacgtggtggtagtgctggaccaggag
cgactgtacaatgagttgaaacgggacttgccccactttgtgcgtactgttctactcccc
aagtcaggaggcgtggttgaacgatcaaaggacttccgccgggagtatagggatgagcgc
atccgagaatatttttatggtttccggggctgtttttatccccatgccttcaatgtcaaa
ttctccgatgtgaaaatctacaaggtgggggcccccaccatcccagactcatgtctccct
ttgggaatgtcacaggaggacaatcaactgaaactggtaccagttaccccagggcgagac
atggtacatcacctcttgagtgtcagcacagctgagggcactgaggagaacatctctgag
accagtgtggctggcttcattgtggtgactagtgtggacctggagcaccaggtttttact
gtgctctctccggcccctcgcccactgcctaagaacttcctcctcatcatggacatccgc
ttcatggatctcaagcgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (11)   
   Pfam (11)   
All databases (31)   

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