KEGG   Sarcophilus harrisii (Tasmanian devil): 100934931
Entry
100934931         CDS       T02286                                 
Symbol
VPS4B
Name
(RefSeq) vacuolar protein sorting-associated protein 4B isoform X2
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
shr  Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03250  Viral life cycle - HIV-1
shr04144  Endocytosis
shr04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:shr00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    100934931 (VPS4B)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    100934931 (VPS4B)
  09143 Cell growth and death
   04217 Necroptosis
    100934931 (VPS4B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:shr04131]
    100934931 (VPS4B)
   03400 DNA repair and recombination proteins [BR:shr03400]
    100934931 (VPS4B)
Membrane trafficking [BR:shr04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    100934931 (VPS4B)
DNA repair and recombination proteins [BR:shr03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    100934931 (VPS4B)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 TIP49 AAA_16 AAA_14 AAA_5 AAA_22 RuvB_N IstB_IS21 AAA_25 AAA_18 DUF815 AAA_2 AAA_33 AAA_17 nSTAND3 AAA_24 RNA_helicase PhoH AAA_7 Mg_chelatase AAA_28 TPR_1 Parvo_NS1 bpMoxR ResIII NACHT DUF5906 AATF-Che1 TPR_2
Other DBs
NCBI-GeneID: 100934931
NCBI-ProteinID: XP_003759698
Ensembl: ENSSHAG00000017852
UniProt: A0A7N4V1T8
Position
1:complement(429479632..429508964)
AA seq 442 aa
MTSANLQKAIDLANKAAQEDKAGNYEEALHLYQNAVQYFIHVVKYEAQGDKAKQSIRAKC
TEYLDRAEKLKEYLKKKEKAPQKPVKEGQSSPTDEKGNDSDGDGESDDPEKKKLQNQLQG
AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSY
LAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEVDSLCGS
RSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPE
DHARTAMFKLHLGTTHNSLSEADFRELGKKTDGYSGADISIIVRDALMQPVRKVQSATHF
KRIRGPSPTNPNVIVEDLLTPCSPGDPGAIEMTWMDVSGDKLLEPAVSMPDMLRSLASTK
PTVNEHDLLKLKKFTEDFGQEG
NT seq 1329 nt   +upstreamnt  +downstreamnt
atgacatctgccaatctccagaaagcaatagaccttgctaacaaagcagcacaagaagat
aaagcagggaactatgaagaagccctccatctatatcaaaatgctgtacagtattttatc
catgtagttaaatatgaagcacaaggtgacaaagcaaagcaaagtatcagggcaaagtgt
acagaatatcttgatagagccgagaaactaaaagaatacctgaaaaagaaagagaaagcc
ccccagaagccagtgaaagagggacaatccagcccaactgatgagaagggaaatgacagt
gatggggatggagaatcagatgacccagaaaaaaagaaactacagaatcaacttcaaggt
gccattgttatagaacgaccaaacgtaaaatggagtgatgttgctgggcttgaaggagcc
aaagaagctcttaaagaagctgtgatattgcccattaagtttccacatctttttacaggt
aaaagaaccccttggaggggcatccttctttttgggccacctggaacagggaaatcctac
ttggccaaagcagttgctacggaagccaacaactcaacatttttttccatatcttcttct
gatcttgtctccaagtggctaggtgaaagtgaaaagttagttaagaatttatttcagctt
gctagagaaaacaagccttccatcatcttcattgatgaagttgattctttgtgtggctct
agaagtgaaaatgaaagtgaagctgcccggcgaattaaaacagaattcctagttcaaatg
caaggggttggtgtggataatgatggaattttggtactgggagctacaaatataccctgg
gttctggattctgctatcaggcgaagatttgagaaacgtatttatattcctttacctgaa
gatcatgccaggacagcaatgtttaaattacatttggggactacacacaacagcctatca
gaagcagacttccgagaactggggaaaaagacagatggctattcaggagctgacatcagt
atcattgtacgagatgcactgatgcaacctgtgaggaaagttcagtcagctactcatttc
aaaagaattagaggtccttcgcccactaatcctaatgtcatagtagaagatttacttact
ccatgctctccgggtgatcctggtgccattgaaatgacatggatggatgtctctggagat
aaacttttggagccagctgtttccatgcctgacatgttacggtcattagctagcacaaag
ccaactgttaatgagcatgacttgctgaaattaaagaagtttacggaagattttggtcaa
gaaggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (32)   
   Pfam (32)   
All databases (63)   

Download RDF
DBGET integrated database retrieval system