KEGG   Stereum hirsutum: STEHIDRAFT_119470
Entry
STEHIDRAFT_119470 CDS       T03127                                 
Name
(RefSeq) RNB-domain-containing protein
  KO
K12585  exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
shs  Stereum hirsutum
Pathway
shs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:shs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    STEHIDRAFT_119470
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:shs03019]
    STEHIDRAFT_119470
Messenger RNA biogenesis [BR:shs03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     STEHIDRAFT_119470
SSDB
Motif
Pfam: RNB Rrp44_CSD1 Rrp44_S1 OB_Dis3 PIN_4 CSD2
Other DBs
NCBI-GeneID: 18796489
NCBI-ProteinID: XP_007301407
JGI: Stehi1_119470
Position
Unknown
AA seq 1003 aa
MVEITIRKRPREDAVVTQRKFFKKTARGKVIKVIRERYLRDDVVCGIQGCRECSNPEEGS
IPRNGATDHKQFPNGHFILPDTNVFLAQMDLMESTLFTSPIILLQTVLEEVRHRSLPLYN
RLKALTKMDEKRTWVFYNEFRSETAVVREEGETPNDRNDRGIRKGAAWYNTHLSLTRPPV
RGQENVPLPPVVLLTDDVANRQKAEKDGIPCLSVRAYVDGMPNSGQLLDLLSATGSDELE
PTAAAAAGRGALYPEYLPPSTLTAGVKAGELHQGFFNANQYNYLEGSVNVPAFSKPVLLV
GRENMNRSVQGDVVVVEVFDEKEWKAPADEVVDQEITLKNDDVEDSEDEGEGEDAEAILR
ERRALQSEESARRSAEKQPTGRVVGVIKRNWRAYVCHIDSTSLTSINSTSLSQQTVFATP
VSRLLPRIRMRTRQAPSLLNQKILVTIDKWDRTSRYPEGHFVRALGKVESKEAEQESLLL
EFDVPYRPFGRAILDCLPSEGENWVVPPKSEGNAIWRDREDLRDMVICSIDPPGCQDIDD
ALHARRLPNGNIEAGVHIADVSHFVLPDNPMDSEAASRGTTVYLVDKRIDMLPALLGTNL
CSLRPFVERLAFSCIWEMTEDAKIVNVRFTKSVIASKSAFTYEEAQIRKDDPNLHDEITE
GIRLLNTLALKLKAGRMAAGALNLASPEVKIHLDTAESSDPIDVEQKELRETNSLVEEFM
LLANISVAKKIQETFPQTAVLRRHLPPPKTNFEKLQDILRKRKGLTLDVSSSGALADSLD
KCLDPSEPAFNTLVRIMATRCMLSAEYFCSGSVSRDTFGHYGLATPIYTHFTSPIRRYAD
VLAHRQLSAAINYTPLHATLHSKAHVERVMDVINRRHRMAQMAGRASVEFYVGLALKGRG
EKARDAGAEKVTEEAFVIRTFRNGLGVFVSKLGIEGLVMFKRETQFDADNYTITVPSSEA
GGKDVEIAVFDKVTVAIEVEKDKNTQRGRVKMTLVTPVDSSAL
NT seq 3012 nt   +upstreamnt  +downstreamnt
atggtcgaaatcacaattcggaagcgacccagagaagacgcagtcgtgacccagcgcaag
ttcttcaagaaaaccgcgagagggaaagtcatcaaagtcatccgcgagcggtacttgaga
gacgatgttgtatgcggtatacaaggatgcagggagtgctccaacccagaagagggctcc
atacctcgaaacggcgcgaccgatcacaagcaattccctaatggccatttcatccttccg
gacacgaacgtcttcttagctcagatggacctcatggaatcgactctctttacctcccct
atcatccttctccaaaccgtcctggaagaagtcaggcatcgctcccttccgctttacaat
cgtctcaaggccttgacaaagatggacgagaagcgtacttgggtgttctacaatgaattc
agatccgagactgccgttgtgcgtgaagaaggagaaactccaaatgacaggaatgaccga
ggtatccggaaaggcgctgcttggtacaatactcatctttccctcactcgccccccagtc
cgaggtcaagaaaatgtcccccttcctcctgtcgttctcttgacagacgacgtcgccaat
cgccaaaaggccgagaaagatggcatcccgtgcctctcagtgcgtgcctatgttgatggc
atgccaaattctggccagttgctcgatttgttgtctgcgacgggttcggacgaactggag
cctactgcagcagcagctgctggtagaggtgctctttatcctgagtatctccctccttct
accctgacggcaggtgtaaaagccggtgaactacaccagggattcttcaatgctaaccag
tacaattacttggagggtagcgtcaacgtacctgcattctccaagccggtattgctggta
ggacgggaaaacatgaaccgttccgtacaaggcgacgtcgtagtggtcgaggttttcgac
gaaaaagagtggaaagctcctgcggatgaagtcgtagaccaagaaattaccttgaagaac
gacgacgtagaggattcggaagatgagggtgaaggtgaagatgccgaggctattttgcgc
gagcggagagctctgcagtctgaagagtctgcaaggcggtctgcggagaaacaacctact
ggacgagtggttggtgtcattaagcgcaattggcgagcatatgtgtgccacatcgattct
acgtcgttaacatctatcaattctacctcactatcccaacaaactgttttcgcaactcca
gtttctcgtctcttaccccgcattcgcatgcgcacccgccaggctccctccctcttgaat
cagaagattctcgtcaccatagacaagtgggatcgcacttcacggtatcccgaaggccac
tttgtgcgtgctctaggtaaggttgaaagcaaagaggctgagcaggaaagtcttttgctg
gagttcgatgtgccgtacagaccattcgggagggcaatattggactgtttaccgagtgaa
ggtgagaactgggtagtgccgccaaagagtgaggggaatgcgatctggagggatagggag
gatctgagggatatggtcatttgtagcattgacccacctggatgccaggatattgacgat
gctttacatgcgagaagattgcccaatggaaacattgaggctggagtccatattgccgat
gtctcccattttgtactcccggataatcctatggatagcgaagctgcctctcgggggacg
accgtttacctggttgataaacggatagacatgttaccagccttgctgggcaccaatctc
tgctctcttcggccatttgttgaacggctagccttctcatgcatctgggaaatgacggag
gacgcgaagatcgtcaatgttcggtttacgaagtctgtcatcgcttccaagtctgcgttc
acgtacgaggaggcacagattcggaaggatgaccccaacttgcacgacgagattactgaa
ggtatccggctactcaacaccctcgccctcaaactcaaagctggtcgtatggccgccgga
gctctcaacctcgcctcccccgaagtcaaaatccacctcgacaccgccgaatcctccgac
ccgatcgatgtcgaacaaaaagagctccgcgagacaaacagcctcgttgaagagttcatg
ctgctcgcgaacatcagcgttgcgaagaagatacaagagacgttcccgcagacggcggta
ctgaggagacatttgccgcctccgaagacgaacttcgagaagttgcaggatatattgagg
aagagaaaaggtttgacgctggatgtgtcgagttcgggggcgttggcagatagtctagat
aagtgcctggacccgagtgagccagcattcaacacccttgtccgaatcatggctactcgt
tgcatgttatctgcggagtacttctgctcaggaagtgtgtcgcgagatacatttggccat
tatggtttggccacaccaatctacacccacttcaccagtcccattcgtcgttatgccgac
gttcttgctcaccgtcaactctcagctgccatcaactacacccctcttcacgccacacta
cactctaaagcccacgtcgagcgtgtcatggacgtgatcaatcgaaggcacaggatggcc
cagatggccgggcgagccagcgtcgagttttatgttggcttagccttgaaaggcagaggc
gagaaggcaagggatgcaggcgcggagaaagtcacagaggaggcctttgttatacgaacg
tttaggaatggacttggagtttttgtgtcgaagctgggcatcgaaggtttggtgatgttc
aagcgcgagacacaattcgatgcggataactacaccataactgttccttcgtcagaggct
ggaggcaaggatgtcgagattgcggtgttcgacaaggtgactgtggcgattgaggtagaa
aaggataagaacacgcagagagggagggtaaaaatgactctagtcactcctgtagactct
agtgcgttgtag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (30)   

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