KEGG   Salinicoccus halodurans: AAT16_05865
Entry
AAT16_05865       CDS       T03940                                 
Symbol
polC
Name
(GenBank) DNA polymerase III PolC
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
shv  Salinicoccus halodurans
Pathway
shv03030  DNA replication
shv03430  Mismatch repair
shv03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:shv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AAT16_05865 (polC)
   03430 Mismatch repair
    AAT16_05865 (polC)
   03440 Homologous recombination
    AAT16_05865 (polC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:shv03032]
    AAT16_05865 (polC)
   03400 DNA repair and recombination proteins [BR:shv03400]
    AAT16_05865 (polC)
Enzymes [BR:shv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     AAT16_05865 (polC)
DNA replication proteins [BR:shv03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     AAT16_05865 (polC)
DNA repair and recombination proteins [BR:shv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     AAT16_05865 (polC)
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger DNA_pol3_a_NI HHH_6 DNA_pol3_a_NII Rv2179c-like tRNA_anti-codon HHH_3 RNase_H_2 DEDDh_C T2SSK Auto_anti-p27
Other DBs
NCBI-ProteinID: AKG73789
UniProt: A0A0F7HJE8
Position
1182647..1186933
AA seq 1428 aa
MSVKGKEQFKVLLEQAGIQDNQHLSGGQLEKIVADDEERVWEFHIHFDRMIPASLRDLME
GSIREAFSSIAAAKIHISADSYEDKDVIDYLESALMQVKVNDNIRFQLLNCDKEFKDGVL
TFSVQNDIEVAHFNKHINGNLTSVYKMFGLPITAIEFRADANLDNDKRSKLEARLKEEKT
ELVQGFIENRKEMEEERENRKEDVVKQIGKSMDLNGVRPLHEVVDEEFNVKVEGVIFASE
VRELRTGRKILQLKITDYTDSIATKMFSRHGKNDEDVFDALSKNDWVVIEGNVEYDEFAR
DMVLMIRNLNVIHKPAKQDTMEDKRVELHLHSEMSQMDALRNVGEYVQRAKDYGHKAIAI
TDHNNVQAYPDAYHAAQAAGIKMIYGMEGLLVDDGAPIAYKPQDIVLENHDFVVFDVETT
GLSSKYDQIIELAGVKVRNGEIVDRFERFSNPNEPLTETIKEITGITDDMLVGAPPIDEV
ITDFKEWVGDAIFVAHNASFDMGFIEAAYKQVGLESYTNGVIDTLELSRTINKEFKKHGL
NILAKKYNVELTQHHRAIYDAEATAYIFIKMLSQIKKLGIENHKEINSTLADPDAYKRSM
PTHVTILVKNQTGLKNLFKIVSNSLTDNYYKSARIRKQLLEEHREGLLIGSACDSGEVFT
AMMQKPYEEAKKAAKFYDYLEVFPKPLYRRLMDREIIRDESTLEEIIKNIIKLGGELDKP
VVATGNVHYIDESEKLCRDILVKSNPGNPLSRGILPDAQFRTTTEMYEEFAFLDEETRRE
IVIDAPNRVADSIDDVTPIKDDLYTPNIDGANEEMRELSYSNARALYGEDLPKIVTDRLE
TELESIIGNGFAVIYLISQKLVKKSLDDGYLVGSRGSVGSSFVATMTEITEVNPLPPHYV
CPTCKKSRFFTDGSVNSGYDLPDKSCEECGVPLIKEGHDIPFETFLGFKGDKVPDIDLNF
SGDYQAEAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDNGLQRRGAEIDRLVL
GCTGVKRTTGQHPGGIIVVPDDMDIYDFTPIQYPANDIEAEWKTTHFDFHSIDNNLLKLD
ILGHDDPTMIRMLQDLSGIDPKTLPVDDKETMSLFSSPETLGVTEEDIICRTGTLGVPEF
GTGFVRQMLEDTRPSTFSELVQISGLSHGTDVWLGNAQDLIRSGTCDLKNVIGCRDDIMV
FLMYQGLEPSLAFNIMEKVRKGKGLSEEHESAMKEQGVPNWYIDSCKKIKYMFPKAHAAA
YVLMAVRIAYFKVHYPLYYYASYFTVRASDFDLLTMVKDKATIRHRVKEMNQNFQELTKK
EKDTLVVLEITNEMAQRGYRVKPVDIEKSDSFDFKIEEDALIPPFIAVPGLGENVAKRIV
ETRETEPFISKEDINKRAGVSQKIIDYMTEMGSLNHLPDKAQLSIFDM
NT seq 4287 nt   +upstreamnt  +downstreamnt
ttgtcagtgaaagggaaggaacagttcaaggtgcttcttgaacaggcgggcatacaggat
aatcagcatttatccggtggccagcttgaaaagatagtggcggacgatgaagagagagta
tgggaattccatatccattttgacagaatgatacctgcttccctgagagatctgatggaa
ggaagcatccgggaggccttttcatcgattgcagcggcaaaaattcatatttcggcagat
tcctatgaagataaggatgtcatagattatctggaatctgcgcttatgcaagttaaagtg
aacgataatatcagattccagcttttgaattgtgacaaggaattcaaggacggtgtgctg
acgttttctgttcagaatgatatcgaagtggcccatttcaataagcatatcaacggcaac
ctgacttctgtttacaaaatgttcggtctgccgatcaccgccatcgaattcagggcggat
gcaaacctggataatgataagcgctcaaaactcgaagcaaggctgaaagaggagaagact
gaactggttcagggcttcatcgaaaaccgcaaggaaatggaagaggagcgggagaaccgc
aaagaggatgtcgtcaaacagattggcaaatcaatggatctgaatggtgtcaggccgctg
catgaagtcgtggatgaggaattcaatgtcaaggtggaaggtgtcatattcgcaagcgag
gtcagggaactcaggacaggacgcaagatccttcagcttaagattacagattacacggat
tccatcgcaaccaaaatgttctcaagacacggtaaaaatgatgaagacgtctttgacgcc
ctgtctaaaaacgactgggtcgtcatcgagggcaacgtggaatatgatgagtttgcgagg
gacatggtactcatgatccgcaatctgaatgtcatccataagcccgccaagcaggatacg
atggaagataagcgcgtggaactccatctgcattcagagatgagccagatggatgcactc
aggaatgtcggggaatatgtgcagcgtgcaaaagattacggtcacaaggcgatcgccatc
accgatcataataatgtccaggcctaccctgatgcgtatcatgccgcacaggcagcaggc
atcaagatgatctacggcatggaaggcctgctggttgacgacggcgcaccgattgcctat
aagccgcaggatatcgtccttgaaaatcatgatttcgtcgtgtttgacgtggagactacc
ggcctgtcttccaaatatgatcagattatagagcttgccggtgtaaaagttcgaaatggc
gaaattgtcgaccgtttcgaacgtttcagcaatccgaatgaaccactgacggagacaatc
aaggaaattacaggcatcaccgacgacatgctggttggtgcaccgccgatcgatgaagtg
atcacagacttcaaagaatgggtgggggacgcaatatttgttgcccataacgcgagcttt
gatatggggttcattgaagctgcctataaacaggtgggcctggaatcgtacacgaacggt
gtcatcgatacgctcgaattgtcccgcacaatcaacaaagagttcaaaaagcatggtctg
aacatactcgccaagaaatataatgtcgagctgacccagcaccaccgggcgatctatgat
gcagaggcgacagcctatatctttatcaagatgctttcacagatcaaaaaactcggcatt
gaaaaccataaagaaatcaacagcacactggcggatccggatgcgtataaacgttcgatg
ccgacacacgtcaccatcctggttaaaaaccagacagggttgaaaaatcttttcaaaatc
gtatccaattcgctgacggacaactattataagtctgcgagaatcagaaaacagcttctt
gaggaacacagggaaggtctgcttatcggcagcgcctgtgattcgggtgaagtgttcaca
gctatgatgcagaagccatatgaagaagcgaagaaggcagccaaattttatgactacctg
gaagtatttccaaaaccactctacagacggctgatggatcgtgagatcatccgtgatgaa
tccacgcttgaagagatcattaaaaatatcatcaagctgggcggggaactggataagccg
gttgttgcgacaggaaatgtccattacattgatgaatcggagaaactgtgccgtgacata
ctcgtcaaaagtaacccggggaatccattgagccgcggcatactgccggatgcacagttc
aggacgacgacggagatgtatgaagaatttgcatttctggatgaagagacccgccgggaa
atcgtcatcgatgcaccgaaccgcgtggcagacagcattgatgacgtcactccgataaaa
gacgatctatatacaccgaacatcgacggtgcgaatgaagagatgagggaactgagctac
agcaatgccagagcactctatggcgaagatctgcccaagatagttacagaccgcctggaa
actgaacttgaaagtatcataggcaacggttttgctgtcatatacctgatcagtcagaaa
ctcgtgaaaaaatctttggacgacggttatctggtcggttccagaggatcggtgggttca
agcttcgtcgcaaccatgacggagattacagaagtgaacccgctgcctccgcattatgta
tgcccgacatgtaagaaatccagattctttacagacggaagtgtaaactccggatatgac
cttccggataagtcatgtgaagagtgcggcgtccccctcatcaaggaaggacacgatatc
ccatttgaaactttcctcggcttcaagggggacaaagttcccgatatcgatttgaacttc
agcggagattatcaggcggaagcccataactatactaaagtgctgttcggtgaggataag
gtgttccgggcgggtacaattggcaccgtggccgagaaaacggcgttcggttacgttaaa
ggttatctgaatgataacggcctgcagaggcgcggcgctgaaatcgacaggctcgtcctt
gggtgtacgggcgtcaaacggacaaccggccagcatccaggcggtattatcgttgtccct
gatgacatggacatctatgattttacaccgatacagtatcctgcaaatgatattgaagcg
gaatggaagactacgcacttcgacttccattcgattgataataaccttctgaagctggat
atcctcggccatgatgatccgactatgatccgtatgctgcaggacctctcaggcatcgac
cctaaaacgctccctgtagatgacaaggagacaatgtctttattcagctctccggaaacg
ctcggcgtaactgaggaggatattatctgccgtacaggcacccttggtgtacctgagttc
ggtacgggcttcgtaagacagatgctcgaagacacgagaccttcgacgttcagtgaactg
gttcagatttcaggcctttcacatggtactgatgtatggctcggcaatgcccaggacttg
atcagaagcggtacatgcgatcttaagaacgtgatcggctgccgggatgacatcatggtc
ttcctcatgtatcaggggcttgaaccttctctcgccttcaacattatggagaaagtgagg
aaaggcaagggactttcagaagaacatgagtcagcgatgaaggaacagggtgtcccgaac
tggtatatcgattcatgcaagaagataaaatatatgttcccgaaagcccatgctgcagcc
tatgtattgatggctgtcagaattgcgtatttcaaagtgcattatccactctactattat
gccagctactttactgtccgtgcttcggactttgatctgctgacgatggtgaaggataag
gcgaccatccgtcacagggtgaaagagatgaatcagaacttccaggaacttaccaaaaag
gaaaaggatacgctggtcgtgctggagatcaccaatgagatggcccagcgtggttaccgg
gtgaaaccggtcgatattgagaaatccgacagctttgattttaaaattgaagaggatgca
cttatcccgccattcatcgcggtgccgggactcggtgagaacgttgcgaagcggattgtg
gaaacaagagaaactgaaccattcatctcaaaggaagatatcaacaaacgtgcaggagtc
tcccagaagatcatcgattatatgacagaaatgggcagtctgaatcaccttccggacaag
gcccagctctctatattcgacatgtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (55)   

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