KEGG   Salinicoccus halodurans: AAT16_12580
Entry
AAT16_12580       CDS       T03940                                 
Name
(GenBank) hypothetical protein
  KO
K03092  RNA polymerase sigma-54 factor
Organism
shv  Salinicoccus halodurans
Pathway
shv02020  Two-component system
shv02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:shv00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    AAT16_12580
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    AAT16_12580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shv03021]
    AAT16_12580
Transcription machinery [BR:shv03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AAT16_12580
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD HTH_Crp_2 Sigma54_AID HTH_3 HTH_26 HTH_IclR MarR_2 Acetyltransf_17 HTH_31
Other DBs
NCBI-ProteinID: AKG74948
UniProt: A0A0F7HP49
Position
2475305..2476498
AA seq 397 aa
MINLDTFVANELGISLNNFIYNSISIFKYDTHELTDYIKNKCDENPLIYISEDRIPLSAL
SDHYQTQSTGIFTELFTHFNCTLDEQKKTAMQYILYSLNSSGFLEADTKTVSDMTGSSPE
EVQGLLNMLKAYDDRKGIGCTDVYDFLRFQLRNQDMYNEKLFTLFISNLDAINSGALDFL
EDDERADLLEYVRLITESCSLSPISEDEPEYLEPDATISVENRSFNIVINDYLSDCIVFE
PLDIQSQDKDFKKEMEKYRRDYEELASILNARKMYLSSVLTIIVNKQRDFLLGTSEFLNP
LDQNDLADATSLSPATISRLLAGKFVSSPKGTVPIKSLLSKKCCNGASVSYAMHLIKSLS
DFETMPDSKISKKLCEFGVTLSRRTVNKYKNEILSQN
NT seq 1194 nt   +upstreamnt  +downstreamnt
atgataaaccttgatacatttgttgcgaatgaacttggtatttcgttgaataatttcatc
tacaattccatcagtatttttaagtatgacacgcatgaactcaccgactatattaaaaat
aaatgtgatgagaaccctctgatctacataagcgaagataggattcctctctcggcttta
tccgatcactatcagactcaatcgaccggcattttcactgagttgttcacccatttcaac
tgtaccctcgatgaacagaagaagacagcgatgcagtatattctttattcccttaattca
tctggctttttggaagcggatacaaaaactgtttctgacatgaccggttcttcgcccgaa
gaggtacaaggactactgaatatgctgaaagcctatgatgaccgtaaaggaatcggctgc
acggatgtttacgattttcttagattccagctgagaaatcaggacatgtacaatgaaaaa
ctgttcacgctgttcatctcaaacctcgatgcgatcaacagcggcgccctcgatttcctg
gaggatgatgaaagagcagatctgctcgagtatgtccggcttattactgaatcctgctcc
ctctcccccatctcggaggatgaacctgaatatctggaaccagatgcaacgatctcagtt
gaaaatagatcattcaatattgtcatcaatgattatctttcagactgcatcgtattcgaa
cctttggatattcagtcacaagataaggatttcaaaaaggaaatggagaaatacaggcgg
gattatgaagaactggcttcaattctgaacgcccggaaaatgtatctgagcagtgtgctg
accatcattgtgaataagcagagggacttcctgttgggaacttcagaatttttaaacccc
ctggatcagaatgacctggccgatgcgacttccctcagcccagcgacaatcagccgcctg
cttgcgggtaaattcgtgtcgtctccaaaagggactgtcccgatcaagtcactcctgtcg
aaaaaatgctgcaacggtgcttctgtcagctatgcaatgcacctgattaaaagcttatct
gacttcgaaacgatgccggacagtaaaatttcaaagaaactgtgtgaattcggcgtcacc
ctttccagaagaacagtgaataaatataaaaatgagatattaagtcaaaattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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