KEGG   Shinella sp. HZN7: shn_01410
Entry
shn_01410         CDS       T04278                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
shz  Shinella sp. HZN7
Brite
KEGG Orthology (KO) [BR:shz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:shz03016]
    shn_01410
Enzymes [BR:shz01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     shn_01410
Transfer RNA biogenesis [BR:shz03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    shn_01410
SSDB
Motif
Pfam: DNA_pol_A_exo1 RNase_H_2
Other DBs
NCBI-ProteinID: ANH06539
UniProt: A0A1A9G8C1
Position
complement(284845..285471)
AA seq 208 aa
MASAIRYHEGDISAADAARYTGAIAIDTETLGLIPRRDRLCVVQLSPGDGTADVIRIAAG
QKDAPNLTAMLEDPARQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLTRTYTDRHGL
KDNLKEMLEVDISKQQQSSDWAAETLSPAQLEYAASDVLHLHALRDKLMARLVRDGRLAH
AEACFAFLPTRAKLDLLGWEETDIFAHS
NT seq 627 nt   +upstreamnt  +downstreamnt
atggcaagtgcaatccggtatcacgaaggtgacatctcggcggcggatgccgcccgctat
accggcgcgatcgccatcgacaccgaaacgctgggcctcatcccgcgccgcgaccggctg
tgcgtcgtgcagctttcgccgggcgacggcaccgcggacgtcatccgcatcgccgccggc
cagaaggacgcaccgaatctcaccgccatgctggaagacccggcccgccagaagatcttt
cactacggccgcttcgacatcgccgtcctgttccacaccttcggcgtcaccaccacgccg
gtcttctgcaccaagatcgcctcgcgcctgacgcgcacctatacggacaggcacggcctg
aaggacaatctgaaggaaatgctcgaagtcgacatttccaagcagcagcagtcctccgac
tgggcggccgagacgctgtcgcccgcgcagctcgaatatgccgcctccgacgtgctgcat
ctccatgcccttcgcgacaagctgatggcacgcctcgtgcgcgacggccggctggcgcat
gcggaagcctgcttcgccttcctgccgacccgcgccaagctcgacctcctcggctgggaa
gagaccgacatcttcgcccatagctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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