KEGG   Ruegeria pomeroyi: SPO0804
Entry
SPO0804           CDS       T00215                                 
Symbol
ihfB
Name
(GenBank) integration host factor, beta subunit
  KO
K05788  integration host factor subunit beta
Organism
sil  Ruegeria pomeroyi
Brite
KEGG Orthology (KO) [BR:sil00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sil03032]
    SPO0804 (ihfB)
   03036 Chromosome and associated proteins [BR:sil03036]
    SPO0804 (ihfB)
   03400 DNA repair and recombination proteins [BR:sil03400]
    SPO0804 (ihfB)
DNA replication proteins [BR:sil03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    SPO0804 (ihfB)
Chromosome and associated proteins [BR:sil03036]
 Prokaryotic type
  Nucleoid associated proteins
   IHF (integration host factor)
    SPO0804 (ihfB)
DNA repair and recombination proteins [BR:sil03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Facilitator
      SPO0804 (ihfB)
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_euk_1 HU-CCDC81_euk_2 HU-DNA_bdg HU-CCDC81_bac_2
Other DBs
NCBI-ProteinID: AAV94109
UniProt: Q5LV98
Position
840120..840404
AA seq 94 aa
MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMARGDRVELRGFGAFSVKKRDARI
GRNPRTGDTVHVEEKHVPFFKTGKLLRDRLNGKA
NT seq 285 nt   +upstreamnt  +downstreamnt
atgatccgttcggaactgatccagaagattgccgacgaaaacccgcatctctaccagcgg
gatgtcgagcggatcgtgaacaccgtttttgaggaagtcaccgacgccatggcgcgcggc
gaccgggtcgagctgcgcggtttcggcgcgttctcggtcaagaagcgggacgcgcgcatt
ggtcgcaatcccaggaccggcgatacggtccatgtagaggaaaagcacgtgccgttcttc
aagaccggcaagctgctgagggatcgcctgaacggaaaagcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (28)   

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