KEGG   Ruegeria pomeroyi: SPO3330
Entry
SPO3330           CDS       T00215                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
sil  Ruegeria pomeroyi
Pathway
sil03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sil00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPO3330 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sil03019]
    SPO3330 (rnr)
   03016 Transfer RNA biogenesis [BR:sil03016]
    SPO3330 (rnr)
Enzymes [BR:sil01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     SPO3330 (rnr)
Messenger RNA biogenesis [BR:sil03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SPO3330 (rnr)
Transfer RNA biogenesis [BR:sil03016]
 Prokaryotic type
  tRNA degradation factors
   SPO3330 (rnr)
SSDB
Motif
Pfam: RNB CSD2 S1 RNase_II_C_S1 MarR_2
Other DBs
NCBI-ProteinID: AAV96557
UniProt: Q5LN82
Position
complement(3530656..3532914)
AA seq 752 aa
MTRIPTKQEILDWISAHPTLTSKRDIAKAFGIKGSDRIDLKRILKELEAEGHLEKRKRSY
ADPDRLPPVSVLQVKEPDENGDLFARPLEWHGEGVEPIVLVLPRASDPALGAGDRILARL
TVVHEEDHNYEARLIRRIGTNPHKILGIFRKSAEGGRILPIDKAGQNEWLVAEGAVHGAK
DGELVEAEQAGPKGRLGLPRARIIERLGDPSAPKAVSLIAIHQHGIPDDFPDKVIEEADS
AKPQGLSGRQDLRDMALVTIDPSDARDHDDACFAHADDDPKNPGGHVIWVAIADVAAYVR
AGSALDREARKRGNSTYFPDRVVPMLPDRLSGDLCSLHEGVPRACIAVRMQIDAQGNKIG
HRFVRGMMRSVASLNYQEVQDAIDGSPNDKTGPLLDEVLTPLYAAYKALDAERDRRQPLD
LDLPERRIVLNDKGHVESVAFRDRLDAHKLIEEFMILANVAAAETLIAKRVPLLFRVHEE
PAPEKLEALRETAQASGLTLAKGQVLQTRHLNALLHQAAGTDEAELINISTLRSMAQAYY
NPENFGHFGLALKNYAHFTSPIRRYSDLIVHRGLIKAHGWGDDGLTADEIEQLDRIATHI
SDTERRSMMAERDTTDRYLAAYLSERVGNEFSGRISGIARFGAFVKLDETGADGLVPVRS
LGREFFHFDREAGTLMGSETGLLIAIGQRVTVRLAQASPVTGGLEFEMLSIEDKDMPRGG
TPSKGKRVVRRKAAKAKHKTDKLKRKMEGRRK
NT seq 2259 nt   +upstreamnt  +downstreamnt
atgactcgcatccctaccaagcaggagatcctcgactggatttccgcgcatcccacgctc
acctcgaaacgcgatatcgccaaggcctttggtatcaagggctcggaccggatcgacctg
aaacgcatcctcaaggagctggaggccgagggccatctggagaagcgcaagcgcagctat
gccgaccccgaccggctgccgccggtcagcgtgttgcaggtgaaagaacccgatgaaaac
ggtgatctcttcgcgcgtccgttggaatggcatggcgaaggggtggaacccatcgtgctg
gtgctgccgcgcgccagtgatccggcgctgggggcgggggatcgtatccttgcccgcctg
accgtggtgcatgaagaggatcacaattacgaggcgcggctgatccgccggatcggcacc
aacccgcacaagatcctcggcatctttcgcaagagcgccgaaggtggccgcattctgccc
atcgacaaggcgggccagaacgaatggctggtggccgagggcgcggtgcatggcgccaag
gacggcgagctggtcgaggccgaacaggccgggcccaagggccggctgggcctgccgcgc
gcccgcatcatcgagcggttgggtgatccatccgcgcccaaggcggtatcgctgatcgcc
atccaccagcacggcatccccgacgatttccccgacaaggtgatcgaggaggccgacagc
gccaagccgcagggcctgtcagggcgccaggatctgcgcgacatggcgctggtcaccatc
gacccctcggatgcgcgcgaccatgatgacgcctgtttcgcccatgccgatgacgacccc
aagaaccctggcggccatgtgatctgggtcgcgattgccgatgtggcggcctatgtccgt
gcgggcagcgcactggatcgcgaggcgcgcaagcgcggcaactcgacctatttccccgac
cgggtggtgccgatgctgcccgaccggctttcgggcgatctgtgctcgctgcacgaaggg
gtgccgcgcgcctgtatcgcggtgcggatgcagatcgacgcgcaaggcaacaagatcggg
caccggtttgtgcgcgggatgatgcgctcggtcgcctcgctgaactatcaggaggtgcag
gacgccatcgacggcagccccaacgacaagaccgggccgctgctggatgaggtgctgacg
ccgctttatgccgcctacaaggcgctcgatgcggaacgtgatcggcgccagccgctcgac
cttgatctgccggaacgcaggatcgtgctgaacgacaagggccatgtggaaagcgtggcc
ttccgcgaccggctggacgcgcacaagctgatcgaagagttcatgatcctcgccaacgtg
gccgccgccgagacgctgatcgccaagcgcgtgccgctgttgttccgggtccacgaggaa
cccgcccccgaaaagctggaggcgctgcgcgagacggcgcaggcctccgggttgacgctg
gccaaggggcaggtgctgcaaacccgtcacctgaacgcgctcttgcatcaggcggcaggc
acggacgaggcggaactgatcaacatctcgaccctgcggtcgatggcgcaggcctattac
aaccccgagaatttcgggcatttcggtctggcgttgaagaattacgcgcatttcacctcg
cccatccggcgctattccgacctgatcgtgcatcgcggcctgatcaaggcgcatggctgg
ggcgatgacgggctgacggcggacgagatcgagcagctggaccgcatcgccacccatatc
tcggacaccgagcgccgctcgatgatggccgagcgggacaccaccgatcgctatctggcg
gcctatctgtcggaacgggtgggcaatgaattcagcggccggatcagcggcatcgcccgg
ttcggcgcctttgtgaaactggatgagaccggcgccgacgggctggtgccggtgcgttcg
ctcgggcgcgagttctttcatttcgaccgcgaggcggggacgctgatggggtcggaaacc
gggctgctgatcgcgatcggtcagcgggtgacggtacggctggcgcaggcctcgccggtg
accggggggctggagttcgagatgctgagcatcgaggacaaggacatgccacgtggcggc
accccgtccaagggcaagcgcgttgtgcgccgtaaggcagccaaggccaagcacaagacc
gacaagctgaagcgcaagatggaaggacgccggaaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (42)   

Download RDF
DBGET integrated database retrieval system