KEGG   Sphingobium indicum B90A: SIDU_09970
Entry
SIDU_09970        CDS       T04604                                 
Name
(GenBank) ribonuclease
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
sinb  Sphingobium indicum B90A
Pathway
sinb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sinb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SIDU_09970
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sinb03019]
    SIDU_09970
   03009 Ribosome biogenesis [BR:sinb03009]
    SIDU_09970
Enzymes [BR:sinb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     SIDU_09970
Messenger RNA biogenesis [BR:sinb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SIDU_09970
Ribosome biogenesis [BR:sinb03009]
 Prokaryotic type
  rRNA processing factors
   SIDU_09970
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 DnaJ_CXXCXGXG Anti-TRAP
Other DBs
NCBI-ProteinID: APL94809
UniProt: A0A1L5BPL0
Position
2076810..2079476
AA seq 888 aa
MLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVDYGGN
RHGFLAFSEIHPDYYQIPREDREALLREERAHAEEEAALRADYDDDDHADAGDGGLEVVE
ATHHHDDEDHGEEAAENGNGDSGRGRGRRGKGDDAADELRRKRMALRRRYKIQDVIKRRQ
VLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKSIIAE
MNLPSTMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREKTLKSDAPALIHNDSDLIKRA
IRDIYNKDIEEVIVEGEYGYKAAKDFMKLLMPSHARRVKQYADAVSLFQRASVEDQLAAM
YNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEAAREIARQLRLRD
MAGLVVIDFIDMEMNSNIRKVEKAMKEALKDDRARIQVGRISGFGLMEMSRQRLRTGVLE
ASTRQCPHCEGTGLVRTASSAGLSALRMLEEEAARGRGNLITLRASQEAAFYVLNNKRRE
LDEIEQRYGVRIAILPDGEVEGARMSVEASGPRPERVVDYTPMVEDDDDLDVVEELDEEE
IEEVEAAQEERAERGEDRGDDREGGGRRRRRRRRRRGGQRDEHRAEGEAQGEAGEDADVA
EEDAEGEGEAATVEAAAEGEGEGRRRGRRGRRGGRRRREAGEEAVSEGSVASEEAVEAVE
AEAVAEPVAEAAPEAPAKEEAPKTRRRPRARKAKESAAPAAEAVEAVVEAPVEAAPEAPV
AEEAPAKPKRTRRKKAEPVAEEAAPVEAVPEAPVAEDAPAKPKRTRRKKAEPVAEEAVAV
EAAPEAPVEAVAPAETAEAVTVNGDAEGGGENDDGTPRRGWWQRTFGQ
NT seq 2667 nt   +upstreamnt  +downstreamnt
atgctgatcgatgcgcgccaccgggaagaaacccgggtcgcggtcgtcaaaggtaaccgg
atcgaggagttcgacttcgaatcggccgagcacaagcagctcaagggcaatatctacctg
gccaaggtcactcgcgtggagccgtcgttgcaggcggccttcgtcgattatggcggcaac
cgccacggcttcctggccttcagcgaaatccatcccgattattatcagatcccccgcgag
gaccgcgaagcgctgctgcgcgaggaacgcgcccatgcggaggaagaggccgcgctgcgc
gccgactatgacgatgacgatcatgccgatgcgggcgatggcggtctggaagtcgtcgag
gcgacccatcatcatgacgatgaggatcatggcgaagaggcggccgaaaacggcaatggt
gacagcggcaggggccgcggccgtcgcggcaagggcgacgacgccgccgacgaactgcgc
cgcaagcgcatggcgctgcgccgccgctacaagatccaggacgtcatcaagcgccgccag
gtgctgctggtgcaggtcgtcaaggaggagcgcggcaacaagggcgcggcgctgaccacc
tatttgtcgctggcgggccgttattgcgtgctgatgcccaacaccagccatggcggcggg
atttcgcgcaagatttcgaacgccgccgaccgcaagcggctcaagtcgatcatcgcggag
atgaacctgccctccaccatgggctgcatcgtccgcaccgcgggcctccagcgcaccaag
ccggagatcaagcgcgacttcgactatctggcgcgcctgtgggacgagatccgcgaaaag
acgctgaaatccgacgcccccgcgctgatccacaatgacagcgacctcatcaagcgggcg
atccgcgacatctacaacaaggatatcgaggaagtcatcgtcgagggcgaatatggctac
aaggcggccaaggacttcatgaagctgctgatgcccagccatgcgcgccgggtgaagcaa
tatgccgacgcggtgtcgctgttccagcgggcgagcgtcgaggaccagcttgcagcgatg
tacaatcccgtcgtgcagttgaagtccggcggctatctggtcatcaatccgaccgaggcg
ctggtgtcgatcgacatcaactccggccggtcgacccgcgagcatggcatcgagcagacc
gccgtcgccaccaatctggaggcggcgcgggagattgcgcggcagttgcgcctgcgcgac
atggccgggctggtcgtcatcgacttcatcgacatggagatgaactccaacatccgcaag
gtcgagaaggcgatgaaggaggcgttgaaggacgaccgcgcccgcatccaggtcggccgg
atttcgggcttcggcctgatggagatgagccgccagcggctgcgcaccggcgtgctggag
gcgtccacccgccagtgcccgcattgcgagggcaccgggctggtccgcaccgcttcgtcg
gcgggcctttccgcgctgcgcatgctggaagaggaggcggcgcgcgggcgcggcaacctg
atcacgctgcgggcgagccaggaggcggccttctacgtgctcaacaacaagcgccgcgaa
ctggacgagatcgagcagcgctatggcgtgcgcatcgcgatcctgcccgatggcgaggtg
gagggcgcgcgcatgtcggtcgaggccagcgggccgcgtccggagcgggtggtcgactat
acgccgatggtcgaggacgatgacgatctcgacgtcgtggaggaactggacgaggaagag
atcgaggaggtcgaagccgcgcaggaggaacgcgccgagcgtggcgaggatcgcggcgat
gatcgggaaggaggcggccgtcgtcgccgccgccgccgccgccgtcggggcggccagcgc
gacgagcatcgcgccgagggcgaagcgcagggcgaagccggcgaggatgccgacgtggcc
gaggaggacgccgagggcgaaggcgaagccgcgactgtggaagccgccgccgagggtgaa
ggcgaaggccgtcgccgtggtcgtcgtggccgccggggcggacgccgccgccgcgaggct
ggcgaggaagcggtgagcgaaggctcggtcgcgagcgaggaagcggtcgaggccgtcgag
gccgaggcggtcgccgagccggtcgcggaagccgcgcccgaagcaccggccaaggaggaa
gcacccaagacccgccggcgtccccgcgcacgcaaggcgaaggaaagcgcagcccctgcc
gccgaggcagtggaagccgtggtcgaggctcctgtcgaagccgcgccggaagcgccagtg
gccgaagaggcgcctgccaaacccaagcgcacccgccgcaagaaggccgaaccggtagcg
gaagaagccgcgcccgtcgaagccgtgccggaagcaccggtggctgaggatgcccccgcc
aagcccaagcgcacccgtcgcaagaaggctgagccggtagcggaagaagccgtcgccgta
gaggctgcgccggaagcgccagtcgaagccgtcgcgcctgccgaaaccgccgaagcggtc
acggtgaacggcgatgccgagggcggcggtgaaaatgatgacggcaccccgcgccgtggc
tggtggcaacgcaccttcggccagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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