KEGG   Sesamum indicum (sesame): 105173628
Entry
105173628         CDS       T04135                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13]
Organism
sind  Sesamum indicum (sesame)
Pathway
sind03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sind00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105173628
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sind03041]
    105173628
Spliceosome [BR:sind03041]
 Complex C
  Other components
   Step II factors
    105173628
SSDB
Motif
Pfam: OB_NTP_bind HA2_C S1 HA2_N Helicase_C DEAD AAA_22 AAA_19 AAA_30 nSTAND3 ABC_tran TsaE AAA_16 Flavi_DEAD T2SSE Sigma54_activ_2 NB-ARC
Other DBs
NCBI-GeneID: 105173628
NCBI-ProteinID: XP_011093749
UniProt: A0A6I9U8H8
Position
LG11:complement(8746900..8752768)
AA seq 1208 aa
MGAEIEADGLKKLEYLSLVSKVCSELETHLGFGDKVLAEFITEMGRNCEKVDEFDAKLKE
NGAEMPDYFVRTLLTIIHAILPPKQKSKSEKGSKEGEKTPFAALKIKDGKERVKDLEKEI
EEEAKSRRRIEEEDEEDKYRDRGRDSDRRERRDRGKDRERGRYGDREERGRYGDREERGR
HGVREERGRHGDREERGRYDRDGYEDDKGRRRNSDRDRNKDEQNWRNGYEEEMDDDRRET
RKERSKRPEEPELYKVYKGRVSRVMDKGCFVQFHEFRGKEGLVHVSQMATRRITNAKDVV
KRDQEVYVKVISVSGNNLSLSMRDVDQNSGKDLLPLKRSEVDDGLRTNPSGRNEGGGMGS
RIGLSGIKILEEDEAVPSRRPLKRMSSPERWEAKQLIASGVMSVKEYPMFDEDGDGMLYQ
EEGAEEELEIELNEDEPAFLQGQSRYSIDMSPVKIFKNPEGSLSRAAALQSALIKERREV
REQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKALTF
GQRSKLSIQEQRQSLPIYKLKNELVKACHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTK
GKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTSPETVIKYMTDGMLLREI
LIDEDLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFF
NCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDYAC
QCLYERMKGLGRNVPELIILPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDG
IFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAFHN
EMSPTSIPEIQRINLGMTTLNLKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEE
GLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQ
KRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYK
LDVVSAGKNFSKIRKAIAAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVI
YHELVMTTKEYMREVTVIDPKWLVELAPRFFKVSDPTKMSKRKRQERIEPLYDRYHEPNS
WRLSKRRA
NT seq 3627 nt   +upstreamnt  +downstreamnt
atgggggcagaaattgaagcagatggactgaagaagctggagtacctatctctagtctcc
aaagtgtgttccgagttagagactcatctagggtttggtgataaggtgttggctgagttc
atcacggagatgggtcggaattgtgagaaagtggacgaattcgatgccaaactgaaggag
aatggtgcagagatgccggattattttgtgcggacgctgctcactattattcatgcgatt
ttgccgccgaagcagaaatcgaaatcggagaaggggtcgaaggagggagagaaaacccca
tttgcagctttgaagatcaaggatggtaaggagagggtgaaggatttggagaaggagatt
gaggaggaagctaaaagccggaggagaatagaggaagaggatgaggaagacaagtatagg
gatagagggagggatagtgacagaagagagagaagggacagagggaaggacagggaaagg
ggtagatatggggatagagaggaaaggggcagatatggggatagagaggaaaggggcaga
catggggtaagagaggaaagaggtagacatggggatagagaggaaaggggcagatacgat
agggatggatatgaagatgataaaggtagacgaagaaacagtgacagggacagaaataaa
gatgaacagaattggaggaatgggtatgaggaagagatggatgatgacaggagggagacg
aggaaggagaggagtaaacggccggaggagccagaattgtataaagtttacaagggaagg
gtttcaagggtgatggataagggatgttttgttcaatttcatgaatttagagggaaagaa
ggtctggtacatgtgtctcagatggcaactaggaggattacaaatgcaaaggatgtagtg
aagcgagatcaggaagtctacgtgaaagttatctcggttagtgggaataatctgagtttg
tcaatgagggatgtggatcagaacagtggaaaggatttgttgcccttgaagaggagtgag
gtggatgatggtttgagaacgaacccttcaggtaggaatgaaggtggagggatggggagt
aggattggtctatcggggatcaaaattctcgaggaagatgaagctgtgccatcacgaaga
ccactgaagagaatgagttcgccagaaaggtgggaggctaagcagctgattgcttctggt
gttatgagcgtaaaggagtatcctatgtttgatgaagacggagatgggatgctttatcag
gaggaaggagcagaagaggagctagagattgaattgaatgaggatgaacctgcttttttg
cagggtcagagtaggtactccattgacatgtctcctgtaaagatattcaagaaccccgag
gggtctttgagtcgtgcagcagcacttcagtctgctctgataaaggagaggagggaagtt
agggaacaacaacaacgaacaatgttggattccatcccaaaggatctgaatcgaccgtgg
gaagatccaatgccagaaacaggtgagaggcatcttgctcaggaactgagaggtgttggt
ttgtctgcatatgacatgccagagtggaaaaaggatgcgtatggtaaagctttaactttt
ggacagagatcaaagctatccatacaggaacagagacaaagcttgcccatctataagttg
aagaatgaactggttaaggcttgccatgataatcaggtcctggttgtcattggtgagaca
gggtcaggtaagacgacacaggtaacacagtatcttgctgaagctggatatactactaaa
ggcaaaataggatgtactcaacctcgtagagtggctgcaatgtctgtggccaagagagtt
gctgaggaatttggttgtcgtttaggggaagaagttggctatgcaattcgttttgaggat
tgtactagtccagagacagtaatcaagtatatgaccgatggtatgcttcttagggagatt
ctgattgatgaagatttgtctcagtactcagtgataatgcttgatgaggctcatgaaagg
acaattcacacagatgtcctttttggattactgaagcaacttgtgaaacggagacctgat
cttcgtctcattgtcacatccgcaactttagatgcagaaaagttttctggatatttcttc
aattgcaacatcttcactattcccgggagaacatttcctgtagaaatactctacaccaag
cagccagaaagtgactacttggacgcatcactgatcactgtattacagattcacttgact
gaacctgaaggtgatatacttctgttcttgactggtcaagaagagatcgattatgcatgt
caatgcctttatgagaggatgaagggtttaggtagaaatgttcccgagttgattatttta
cctgtgtacagtgccttacctagtgaaatgcagtccaggatttttgagcctgcacctcct
ggaaaaagaaaagtagttgttgctacaaatattgctgaagcttctttgactattgatggc
atattctatgtgattgatcctgggtttgcaaagcaaaatgtctacaatcctaaacagggg
cttgattcactggtgataactccaatatcacaagcatctgcaaagcaaagggcaggacga
gctgggcgaacaggaccaggaaagtgctatcgtctctatacagagagtgcatttcacaat
gagatgtctcccacttcaattccagagatacagaggattaatctcggaatgactactctt
aatttgaaagctatgggtattaatgacctattatcttttgattttatggaccctccttca
ccgcaggcacttatatcagccatggaacagttatacagtttaggagctctggatgaagag
ggtctccttaccaagttgggtaggaaaatggcagaatttcctctagatccgccactgtcc
aaaatgcttcttgccagtgtagatctcggttgcagtgatgagattctgaccatcattgca
atgattcagactggaaatatattctatcgaccaagagaaaaacaggctcaggcagaccag
aaaagagcaaagttttttcagcctgaaggagaccatttgacactacttgctgtttatgag
gcgtggaaagcaaagaatttctcaggtccatggtgctttgagaattttgttcagtctcga
tcattgagaagggcgcaggatgtgagaaaacagcttctctccatcatggacaagtacaag
ttggatgttgtaagtgctggtaagaacttttcaaagattcggaaagctatagctgctggt
ttctttttccatgctgctagaaaggatccacaagaaggctacagaacgctagtcgagaac
cagccagtttatatacatccaagcagtgctttgttccaaagacaacctgactgggttatt
taccacgaattggtgatgaccactaaggagtatatgcgtgaggtcacagttatagatccc
aagtggcttgttgaactagctccaagattcttcaaggtctcagatcctacaaaaatgagc
aagcgtaagagacaagagcgtattgagccactctatgacagatatcatgaaccaaattct
tggcgtttgagcaaaaggcgtgcttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (17)   
   Pfam (17)   
All databases (67)   

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