KEGG   Sinimarinibacterium sp. NLF-5-8: GT972_03075
Entry
GT972_03075       CDS       T06400                                 
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
sini  Sinimarinibacterium sp. NLF-5-8
Pathway
sini02020  Two-component system
sini02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:sini00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    GT972_03075 (rpoN)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    GT972_03075 (rpoN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sini03021]
    GT972_03075 (rpoN)
Transcription machinery [BR:sini03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     GT972_03075 (rpoN)
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID TetR_N HTH_IclR HTH_38 HTH_3 Phage_CII MarR_2 HTH_23 HTH_31 HTH_21
Other DBs
NCBI-ProteinID: QHS09237
UniProt: A0A6P1U7K1
Position
608837..610351
AA seq 504 aa
MKAGLHVNLSQTMAMTPQLLQSIRLLQLSSLELEQELREALESNVMLEAVEPGDAEDAPD
AVTTDADDAAFDPPASESRDAVSNTTEEVATIRTDGAEALAEVSADFEWSSAESWSGGEP
PHDETGDSWEARMAQGETGDVHAHVLEQLQLVVQTPRQAQLVAAIVEAVDDNGYLTRSLE
QIAEARVWVPPLAEGELEAALRQVHGVEPSGYGARDLRECLWLQLAALPPQTPGRALALS
IVDTELALLASHDVAALARALEVDPQACLQAVDLVLALNPKPGASMELEAQAAVPDLVVS
GQPGLWKVALNAERLPRVRVNALYERMLTVEKHRAMREQLQEARWLVRGIEMRQDTLLRA
GQAIFERQVGFLERGEEGMAALTLREIADAIGMHESTISRVTSNKWVQTPWGVYELKAFF
PSQLTGREGDTSGTAVKAMIRRIIDAETTPLSDSDITAQLARSGVQVARRTVAKYREAMR
IAPVKERKAAARRETLRQQGQHIS
NT seq 1515 nt   +upstreamnt  +downstreamnt
atgaaagccggtctgcacgtcaatctttcgcagacgatggcgatgacgccgcaattgctg
caatcgatccggttgctgcaactgtcgtcattggagcttgagcaggaattgcgtgaggcg
ctggaaagcaacgtcatgctcgaagctgtcgagccgggcgatgcggaggatgccccggat
gccgtcaccactgacgccgatgatgcggcttttgatcctcctgcttccgaaagccgcgat
gcagtcagcaacaccaccgaagaagtggccaccatccgcacggatggcgccgaggccttg
gcagaggtttcggctgattttgaatggtccagtgctgaatcctggtcgggcggtgagcca
ccgcatgatgagacgggcgactcttgggaagcccggatggcccagggcgaaaccggtgat
gtgcatgcgcatgtgctggagcagttgcagctggtggtacaaacgccgcggcaggcgcaa
ctggttgcggccatcgtcgaggccgttgatgacaacgggtatttgacacgctctctggag
cagatcgccgaagcacgggtatgggtgccgccgctggccgagggtgaactggaggcggcg
ctgcgacaggtgcatggcgtagagcccagcggctacggcgcgcgcgatctgcgtgaatgc
ctgtggctgcaactggcggcattgccgccgcagacgccggggcgcgccttggcgctgagc
attgtcgataccgaacttgcgctgctggccagccatgatgtggcggctttggcgcgcgcg
ctggaggtcgatccgcaggcctgtttgcaggcggtggatctggtgttggcgctcaacccc
aagccgggcgccagcatggagctggaagcgcaggcggcagtgccggatctggtcgtcagc
ggccagcccggcctatggaaggttgcgctcaatgccgagcgcttgccgcgcgtgcgggtc
aatgccctgtacgagcgcatgctcacggttgaaaagcaccgcgcgatgcgcgaacagctg
caagaagcccgttggctggtgcgtggcatcgaaatgcgtcaggacacattgctgcgcgca
gggcaggcgatctttgaacggcaggttggttttcttgagcgtggcgaggagggcatggcg
gccttgacgctgcgtgagattgccgatgccatcggcatgcatgaatcgaccatcagccgg
gtcaccagcaacaagtgggtacagaccccgtggggggtgtatgagctcaaggcgtttttc
ccctcgcagctgaccgggcgtgagggcgatacctccgggacggcggtcaaggcgatgatc
cgcaggatcatcgatgccgaaaccacgccactgtccgacagtgacatcaccgcacaactg
gcgcgcagtggcgtccaggtggcgcggcggacggtggccaaataccgcgaagccatgcgt
attgcgccggtcaaggagcgcaaggcagcggcgcgccgggagacgctgcgccagcaaggg
cagcacatctcatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (20)   

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