KEGG   Ruegeria sp. TM1040: TM1040_1151
Entry
TM1040_1151       CDS       T00359                                 
Name
(GenBank) ribonucleoside-diphosphate reductase class II
  KO
K00525  ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Organism
sit  Ruegeria sp. TM1040
Pathway
sit00230  Purine metabolism
sit00240  Pyrimidine metabolism
sit01100  Metabolic pathways
sit01232  Nucleotide metabolism
Module
sit_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
sit_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Brite
KEGG Orthology (KO) [BR:sit00001]
 09100 Metabolism
  09104 Nucleotide metabolism
   00230 Purine metabolism
    TM1040_1151
   00240 Pyrimidine metabolism
    TM1040_1151
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sit03400]
    TM1040_1151
Enzymes [BR:sit01000]
 1. Oxidoreductases
  1.17  Acting on CH or CH2 groups
   1.17.4  With a disulfide as acceptor
    1.17.4.1  ribonucleoside-diphosphate reductase
     TM1040_1151
DNA repair and recombination proteins [BR:sit03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   Modulation of nucleotide pools
    TM1040_1151
SSDB
Motif
Pfam: Ribonuc_red_lgC Ribonuc_red_2_N TACO1_YebC_N RuvA_C
Other DBs
NCBI-ProteinID: ABF63884
RoseoBase: TM1040_1151
UniProt: Q1GHI2
Position
1238449..1242102
AA seq 1217 aa
MKIERRFTEAGQDAYASLDFIGATSEIRNPDGTIVFRLEGIEVPSTWSQVASDVIAQKYF
RKAGVPSRLKKVREKGVPEFLWRSVPADDNVELGGETSSKQVFDRLAGAWTYWGWKGGYF
SSEEDARAYFDEMRYMLATQRAAPNSPQWFNTGLHWAYGIDGPAQGHHYVDYKTGKLTKS
DSAYEHPQPHACFIQSVSDDLVQDGGIMDLWVREARLFKYGSGTGTNFSHLRAEGEKLSG
GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFIEWKVLEEQKVASI
VAGSKMHEKMLNGIFEALRTWDGLSEDAYDPAENPALKKAIREAKKVAIPETYIKRVLDY
ARQGYDSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLHAVEKDADWELINRTDGQV
AKTVKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPEDGEIRGSNPCSEYMFLDDTAC
NLASLNLLTFYQGGVFQAEDFMHASRLWTLTLEISVMMAQFPSKEIAQLSYDFRTLGLGY
ANIGGLLMNMGYGYDSDEGRALCGSLTAIMTGVAYATSAEIASELGPFAGYERNADHMLR
VMRNHRNAAYGATEGYDKLTVKPVPLDLQNCPDARLTELAMSAWDEAVRLGEEHGYRNAQ
STVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPSALEGLGYSSAQI
EEIVSYAVGHGSIGNAPGINHTSLTGHGFGPNELAKVDAALESAFDIRFVFNQWTLGEEF
CTGVLGIPADKLNDPAFDLLRHLGFSKADIEAANDHVCGTMTLEGAPHLKEEHYSIFDCA
NPCGKKGKRYLGVESHIKMMAAAQSFISGAISKTINMPNNATIEDCQKAYELSWSLGVKA
NALYRDGSKLSQPLAAALVEDDDEAAEVLESGSVPEKAAVLAEKIVEKVVIKEVMKSHRT
KMPQRRKGYTQKAVVGGHKVYLRTGEYEDGNLGEIFIDMHKEGAGFRAMMNNFAIAVSVG
LQYGVPLEEFVDAFTFTKFEPAGMVQGNDSIKNATSILDYVFRELAVSYLDRTDLAHVKP
EGATFDDLGRGEAEEGVSNLSELSDGAASKSLEVLKQISSTGYLRKRLPQELVVLQGGQT
SVAVTALDGSTDPVAALQKLVPETSEAPAVSSAMDARTKARMQGYEGDPCGECGNYTLVR
NGTCMKCNTCGSTSGCS
NT seq 3654 nt   +upstreamnt  +downstreamnt
atgaaaatcgagcgtcgtttcacagaagcagggcaggatgcctatgcatccttggatttc
atcggggcgacgtccgagatccgaaaccctgatggcaccatcgtgttccggctcgaaggc
atcgaggttccatcgacctggagccaagtggccagcgacgtgatcgcgcagaagtacttt
cgcaaggccggtgtcccgtcgcgcctgaagaaagtccgcgagaaaggcgtgccggagttc
ctgtggcgttcggttccagctgatgacaatgtggagctcggcggcgagacctcctccaaa
caggtgttcgaccgtctggccggggcctggacctactggggctggaaggggggctatttc
tcctccgaggaggacgcgcgcgcctatttcgacgagatgcgctatatgctggcaacccag
cgcgccgcgcccaacagcccgcagtggttcaacactggcctgcactgggcctatggcatc
gacggcccggcgcaggggcatcactatgtggattacaagaccggaaagctgaccaaatcc
gacagcgcctatgagcacccgcaaccgcacgcctgctttatccagtccgtgtcggacgat
ctggtgcaggacggtggcatcatggatctctgggtgcgtgaggcgcgcttgttcaaatac
ggctccggcaccggcaccaacttcagccatctgcgggccgagggcgagaagctctctggt
gggggcaaatcctctggtctcatgggctttttgaaaatcggcgatcgtgctgctggcgcg
atcaaatcaggcgggacaacccgtcgagcagcgaagatggtgatcgtggatgccgatcac
ccggatatcgagcaattcatcgaatggaaggtgctcgaagaacagaaagtcgcctccatc
gtggccggctccaagatgcacgagaagatgctcaacggtatctttgaagcgctgcggacg
tgggacggtctctctgaggatgcctatgatccggcggaaaacccggctctgaaaaaagcg
atccgcgaagccaagaaggtcgccatcccagagacttatatcaaacgcgtgctggattat
gctcgtcagggctatgacagcatcgagttcccgacctatgacaccgattgggactctgag
gcctattcgtcggtctcgggccagaactccaacaactccatccgcgtcaccaatgcattc
ctgcatgcggtcgaaaaagacgccgattgggagctgatcaaccgcaccgacggccaggtc
gccaagaccgtgaaggcgcgtgatctctgggagaaggtcggccacgcagcctgggcctgc
gccgatccgggcatccagttccacgacactgtcaatgaatggcacacctgccccgaagat
ggtgagatccggggctcaaacccttgttctgaatacatgttcctggacgacaccgcctgt
aacctggcgtcgctgaacctcctgaccttctatcagggcggcgtgttccaggccgaagat
ttcatgcacgccagccgtctgtggacgctgacgctggaaatctcggtgatgatggcgcag
ttcccatcgaaggaaatcgcgcagctgtcgtatgacttccgcacgctgggtctgggctat
gccaacatcggtggcctgctgatgaacatgggctacggctatgacagcgacgaaggccgc
gcgctttgcggatctttgacagcgatcatgactggtgtggcctatgcgacctctgccgag
atcgcctccgagttggggccctttgcgggctatgagcgcaatgccgaccacatgctgcgg
gtgatgcgcaatcaccgcaacgcggcctatggtgcgaccgagggatatgacaagctcacc
gtgaagccggtgccgttggatttgcagaattgcccggatgcgcgtctcacggaactcgcg
atgagcgcctgggacgaggcggttcgccttggcgaggaacacggctatcgcaacgcccaa
tccaccgtgatcgcgcccaccggtaccattggtctggtgatggactgcgacaccaccggg
atcgagccggactttgccctcgtgaagttcaaaaaactcgcaggtggcgggtatttcaag
atcatcaatcgctcggtgccctcggcgctcgaagggctcggctattcctccgcgcagatc
gaagagatcgtctcttatgcggtcggtcatggctccatcgggaacgcgccggggatcaac
cacacctcgctcaccggccatggttttggccccaatgagctggcaaaggtggacgctgca
cttgagagtgcctttgacatccggtttgtgttcaaccagtggacattgggcgaggagttc
tgcaccggcgtgttgggcattcctgccgataagctgaatgatccggcctttgatctgctg
cgtcaccttgggttctccaaggccgacattgaggctgccaatgaccatgtctgcggcacc
atgacgcttgaaggtgcgccgcatctcaaggaagagcattattcgatcttcgattgtgcc
aacccctgcggcaaaaaaggtaagcgttatcttggggttgagagccatatcaagatgatg
gcggccgcgcagagctttatctccggtgcgatttccaagaccatcaacatgcccaacaac
gccaccatcgaggactgtcagaaggcctacgagctgagctggtccttgggtgtgaaggcc
aatgcgctctatcgtgacggctccaaactgagccagccgctcgcggcggcgctcgttgag
gatgatgacgaggcggcggaggtgctcgagagcggctcggtgccggaaaaagcggctgtt
ctggccgagaagatcgtcgagaaagtggtcatcaaggaggtgatgaaatctcatcgcacc
aagatgccgcagcgccgcaagggctatacgcaaaaggcggttgtcggcggccacaaggtc
tacttgcgcacgggggaatatgaggacggcaacctcggcgagatcttcatcgacatgcac
aaggaaggcgcgggcttccgggcgatgatgaacaactttgccattgcggtctcggttggt
ctgcaatacggcgtgccgctcgaggaatttgtggatgccttcacattcacgaaattcgaa
cctgcgggcatggttcagggcaacgactcgatcaagaacgcgacctcgatcctcgactat
gtgttccgcgaactcgccgtcagctaccttgatcggacggatctggcgcatgtgaagccc
gaaggcgcaacctttgatgatctgggccgtggcgaagcagaagagggcgtgtcgaacctc
tctgagctgagcgatggggctgcgtcgaaatcgctcgaggtgctaaagcagatctcctct
accggctatctgcgcaagcgtctgccgcaggaactggtggtgctgcaaggcggccagacc
agtgtagcggtgaccgctctggatggtagcactgatccggttgcagccctgcaaaaactg
gtacctgagacctctgaggccccggccgtgagcagcgcaatggatgcgcgcaccaaggcc
cggatgcagggctatgagggggatccttgcggcgaatgcggcaactacacgctggtgcgc
aacggcacctgcatgaaatgcaacacctgcggctccacctcgggctgtagctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (6)   
   KEGG PATHWAY (4)   
   KEGG MODULE (2)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (5)   
   KEGG ENZYME (1)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   ROSEOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (35)   

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