KEGG   Ruegeria sp. TM1040: TM1040_2166
Entry
TM1040_2166       CDS       T00359                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sit  Ruegeria sp. TM1040
Pathway
sit03410  Base excision repair
sit03430  Mismatch repair
sit03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    TM1040_2166
   03430 Mismatch repair
    TM1040_2166
   03440 Homologous recombination
    TM1040_2166
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sit03400]
    TM1040_2166
DNA repair and recombination proteins [BR:sit03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     TM1040_2166
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     TM1040_2166
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      TM1040_2166
SSDB
Motif
Pfam: RecJ_OB DHH DHHA1 Prok-RING_1 GapR_DNA-bd
Other DBs
NCBI-ProteinID: ABF64898
RoseoBase: TM1040_2166
UniProt: Q1GEL8
Position
2275574..2277385
AA seq 603 aa
MGKDEGRVPRGSGLFYTEDEGIELSFLGVETSLTGRRWVGPGVDQARASEHLAQETGLPP
AVCQVLARRGVPAHEATGFLTPQLKDLLPDPRRMKDMETAAARFLQAVERRERIAIFADY
DVDGGSSAALLLVYLRQMGQQATLYIPDRIDEGYGPNDAAMAALARDHDLIICVDCGTLS
HGPIAAAKGADVVVLDHHLGGETLPDCVAVVNPNRQDEDGDLGYFCAAGVVFLMLVEVRR
QARDKGLGAGPDLMAMLDLVALATVADVAPLIGANRALVRQGLKVMGRRQRPGLVALADV
SRMDAAPSTYHLGFLLGPRVNAGGRIGKADLGARLLSTDDPHEAAALSERLDQLNTERRD
IENAVRAAALEQAEARGFDAPLVWAAGEGWHPGVVGIVASRLKEATGRPAVVIGLDGEEG
KGSGRSVSGIDLGASIQKVAMEGLLLKGGGHKMAAGLTVARGQLEPAMARLAELLDKQGA
GDLGPADLKLDGMLMPGAASVELIEQIEQAGPFGAGAPAPRYGFPDVAVRFAKRVGESHL
KVSFTDGMGGNIDAIAFGAFDTNLGPRLLEHGGARFHVSGRLEVNTWGGRQSAQLRLEDA
AEA
NT seq 1812 nt   +upstreamnt  +downstreamnt
ttgggaaaagatgaaggccgggtcccgcgcgggtccggccttttttacacagaagacgag
ggaatagagttgagctttctgggtgtcgagacctcactgaccggacgccgctgggtggga
cccggtgtggatcaggcccgcgcaagcgagcatctggcgcaggaaaccgggctacctcct
gcggtgtgtcaggtcctcgcacgccggggcgtgcccgcgcatgaggccaccgggtttctg
acgccgcagctcaaggatctcttgcccgatccgcgccgcatgaaggacatggagaccgca
gcagcgcgctttctgcaagccgtggagcggcgcgagcggattgcgatctttgccgattat
gacgtcgatggcggctcttcggcggcgcttttgctggtgtacctgcgacagatgggccag
caggcgacactatatattccggatcgcattgatgagggttatggccccaatgatgcggca
atggcggcgctggcgcgcgatcatgaccttatcatctgcgtggactgtggcacactttcg
cacgggcccatcgcagcggcgaagggcgcggatgtggtggttctggatcaccaccttggc
ggcgagaccctgcccgactgcgtggcagtggtgaaccccaaccggcaggatgaggacggc
gatctgggctatttctgcgccgctggtgtggtgttcctgatgctcgtcgaggtgcgccgt
caggcgcgcgacaaggggcttggcgcaggccctgatctgatggcgatgctcgatctggtg
gcgctggccaccgtggcagatgtggcccccctgatcggcgcgaaccgcgcgctggtgcgc
caaggcctgaaggtgatggggcgacgccaacgtccgggtctggttgccctcgcggatgtg
agccggatggatgcggcgccctcaacctatcacctcggctttctcctggggccgcgggtc
aatgcgggcgggcggatcggcaaggcggaccttggtgcgcgcctgctgtcgacggatgac
ccgcatgaggctgctgcgctctccgaacggcttgaccagctcaatacggagcggcgcgac
attgagaacgcggtgcgtgctgccgcactggaacaggccgaggcgcgcggctttgacgcg
cctttggtctgggcggcgggggaaggctggcatccgggcgtggtcggcatcgtcgcctcg
cgcctcaaggaagcaacgggccgacctgcggtggtcatcggcctagacggcgaagagggc
aaaggatcgggacgctctgtctcgggcatcgaccttggggcctcgatccagaaggtcgca
atggaagggctgctcttgaagggcggcgggcacaagatggctgcgggcctcacggtggcg
cgcggccagctggaacccgcgatggcccgccttgcagagctcttggacaaacagggcgca
ggcgatctgggccccgcggatctgaagctcgacgggatgctgatgcccggcgccgccagc
gtggagttgatcgagcagatcgaacaggccgggccgtttggcgctggggcccctgccccc
cgctatgggtttcctgacgtcgccgtacgctttgccaaacgggttggagaatcgcatctc
aaggtcagtttcaccgatgggatgggcggcaatatcgacgccatcgcctttggcgccttt
gacaccaacctcgggccgcgcttgctcgaacacggaggcgcgcgctttcatgtctccgga
cggctagaggtcaacacctggggcgggcgccaaagcgcgcaattgcgactggaggacgca
gccgaggcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   ROSEOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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