KEGG   Ruegeria sp. TM1040: TM1040_2384
Entry
TM1040_2384       CDS       T00359                                 
Name
(GenBank) Pseudouridylate synthase
  KO
K06173  tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
Organism
sit  Ruegeria sp. TM1040
Brite
KEGG Orthology (KO) [BR:sit00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sit03016]
    TM1040_2384
Enzymes [BR:sit01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.12  tRNA pseudouridine38-40 synthase
     TM1040_2384
Transfer RNA biogenesis [BR:sit03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    TM1040_2384
 Prokaryotic type
    TM1040_2384
SSDB
Motif
Pfam: PseudoU_synth_1
Other DBs
NCBI-ProteinID: ABF65116
RoseoBase: TM1040_2384
UniProt: Q1GE00
Position
complement(2503881..2504660)
AA seq 259 aa
MPRFALKVEYHGKPFAGWQRQKDQPSVQGAIEAALARIEPGEHTIAAAGRTDTGVHGLGQ
VAHCDLEKNWDPFRLSEALNYHLKPAPVAIVDAALVDDEWHARFSAVERQYLFRILMRRA
PATHDEGQVWQIKHDLDVAAMQAGANMLLGNHDFTTFRSSICQAASPVKTLDELRVERVQ
GLSGPEVHFHVRARSFLHNQVRSFVGTLERVGTGAWSPEDVKHALEAKDRAACGPVCPGH
GLYLARVGYPDPVFSSDRV
NT seq 780 nt   +upstreamnt  +downstreamnt
atgccgcgttttgctctcaaagttgaatatcatggaaagccgtttgccggttggcaacgg
cagaaggaccaaccgtctgttcagggggcgattgaggcagcgctcgcgcggatcgagccg
ggtgagcacacgattgccgccgccggacgcaccgatacgggggtgcatgggcttgggcag
gttgcgcattgcgacctcgagaagaactgggatccgtttcgcctgagtgaagcactgaac
taccacctgaagcccgccccggttgcgatcgtggatgcagcccttgtggacgacgaatgg
catgcccgcttcagtgcggtggagcggcaatatctgttccgcatcctgatgcgccgcgct
cctgcgactcacgatgaggggcaggtctggcagatcaaacatgatctggatgtcgcggcg
atgcaggcgggagccaatatgctgcttggaaatcacgatttcaccacgtttcgctcgtcg
atctgtcaggctgccagcccggtgaagaccttggatgagctgagagtggagcgcgttcag
ggactatcgggtccagaggtgcattttcatgtgcgcgcgcgcagcttcctacacaatcag
gttcgcagttttgtcggaacacttgagcgtgtgggcaccggagcatggagccccgaggac
gtcaaacacgcgcttgaggccaaggaccgcgcggcctgtggtcctgtgtgcccgggccat
gggctctatctggcgcgggtgggctatcctgatccggttttttctagcgaccgggtgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   ROSEOBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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