KEGG   Ruegeria sp. TM1040: TM1040_3312
Entry
TM1040_3312       CDS       T00359                                 
Name
(GenBank) putative periplasmic solute-binding protein
  KO
K02055  putative spermidine/putrescine transport system substrate-binding protein
Organism
sit  Ruegeria sp. TM1040
Pathway
sit02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:sit00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    TM1040_3312
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:sit02000]
    TM1040_3312
Transporters [BR:sit02000]
 ABC transporters, prokaryotic type
  Mineral and organic ion transporters
   Putative spermidine/putrescine transporter
    TM1040_3312
SSDB
Motif
Pfam: SBP_bac_6 SBP_bac_8 SBP_bac_11 SBP_bac_1 DUF4148
Other DBs
NCBI-ProteinID: ABF62284
RoseoBase: TM1040_3312
UniProt: Q1GM32
Position
mega:321168..322187
AA seq 339 aa
MKHIALTVLAATALAAPLTASFASSAQAEDAICYNCPPQWADWASMLEAIETEIGVSLPH
DNKNSGQTFAQLVAEKDSPVADVAYYGVTTGIKAGKEGLVEAYKPAGFDEIPEGLKDPEG
KWFAVHYGTIGFFVNVDALGGAPVPQCFADLKKPAYQGMVGYLDPSSAFVGYAGAVAVNL
SFGGDLQDFDPAIEYFSELAENAPIVPKQTSYARVVSGEIPILFDYDFNAYRAKYEEDGN
FEFVLPCEGSVRVPYVMSLVGNAPHGETGKKVLDFILSDKGQAIWTNAYLQPARPVELPA
EVAEKFLPASDYARAQAVNYAEMEKAQAGFGERYLNEVK
NT seq 1020 nt   +upstreamnt  +downstreamnt
atgaaacatatcgctcttacggttctggctgcaaccgctcttgcggcaccgctgaccgcg
tcttttgcatcttcggcgcaggccgaagacgccatctgctacaattgccccccgcaatgg
gcggattgggcgtccatgctggaggccatcgagaccgagatcggtgtcagccttccgcat
gacaacaagaactccggccagacatttgcacagcttgtggctgaaaaagacagccccgtg
gcagatgtggcctattacggtgtgaccaccggcatcaaggcgggcaaggaaggtctggtc
gaggcgtacaagcccgcaggttttgacgagatcccggaggggctcaaagaccccgaaggc
aagtggttcgcagtgcattacggcaccatcgggttctttgtgaatgtggacgcccttggc
ggcgcgcccgtcccgcagtgctttgcagacctgaaaaagcctgcctatcagggaatggtg
ggttatctggatccctcgtcggcctttgtcggatatgccggggccgtcgccgtcaacctt
tcctttgggggcgatctgcaagactttgaccccgcaatcgagtatttttccgagctggca
gagaacgcaccgatcgtgcccaagcagacgtcttatgcgcgggtcgtatcgggagagatc
ccgatcctgtttgattacgacttcaacgcctatcgcgcgaaatacgaagaagacggaaat
tttgaatttgtcctgccctgcgaggggtcggtgcgtgtaccctatgtcatgagcctcgtg
ggcaatgcgcctcacggcgagaccggcaagaaggttctggatttcattctctctgacaaa
gggcaggcgatctggaccaacgcctatctgcagcccgcgcgcccggttgagctgcctgct
gaggtggcggagaaattcctgcccgccagcgattatgcccgtgcacaggctgtgaactat
gcagagatggaaaaggcgcaggccggttttggcgaacgctacctgaacgaagtcaaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   ROSEOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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