KEGG T00359: TM1040

Ruegeria sp. TM1040: TM1040_3370

Entry

TM1040_3370       CDS       T00359

Name

(GenBank) Deoxyribodipyrimidine photo-lyase family protein

K01669

deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]

Organism

sit Ruegeria sp. TM1040

Brite

KEGG Orthology (KO) [BR:sit00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sit03400]
    TM1040_3370
Enzymes [BR:sit01000]
4. Lyases
  4.1  Carbon-carbon lyases
   4.1.99  Other carbon-carbon lyases
    4.1.99.3  deoxyribodipyrimidine photo-lyase
     TM1040_3370
DNA repair and recombination proteins [BR:sit03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   Direct repair
    TM1040_3370
Prokaryotic type
    TM1040_3370

SSDB

Motif

Pfam:

FAD_binding_7

Other DBs

NCBI-ProteinID:

ABF62342

RoseoBase:

TM1040_3370

UniProt:

Q1GLX4

Position

mega:complement(381777..383009)

AA seq 410 aa
MATQEPQIGPATRAEALLRMEAFTPRMGLNYATFRNHDYGPQRQSAVSMLSPYLRRRLLT
EPEVIAAALAAHGPQEADKFVQEVLWRGYFKGWMERRPEVWANYITGRDADFVALEEDPG
LAIRVNAAETGETGLAYFDTWAKELVRTGYLHNHARMWFASLWIFTLKLPWRLGADFFLR
HLLDGDPASNTCSWRWVAGLHTRGKPYVAQASNIARFSGGRFAPQESELATEVTGLMDEE
PEGLPHVNPLRSVLSPEEAKPTAVLLTEEDCMPASADLASLDIRGAARLYCSHLRSPRRV
AAAVSTFEEDALADTVARIGLDAQPWAASEPEALADWVQSIGAQQIFMPYATVGPLGDWI
ARALPLLRARGVAVAEWQRDWDGLVWPHATAGFFKVKKRLPDILTKAGLT

NT seq 1233 nt +upstreamnt +downstreamnt
atggcaacacaagaaccgcaaataggccccgcgacacgcgccgaagctctgctgcgaatg
gaggcattcacgccgcgcatggggctcaactacgcgacatttcgcaaccatgactatggg
cctcaacgtcaaagcgctgtgtcgatgttatcgccctatcttcgccgtcgcctcctgacc
gagccggaagtgattgcggcagccttggcggcacacggacctcaggaggcagacaaattc
gtccaagaagtcctgtggcgcggctatttcaagggatggatggagcggcgaccggaggtc
tgggcaaactatatcaccgggcgcgatgcggacttcgtcgcccttgaagaggatccgggg
ttggcgatacgcgtgaatgctgcagaaacgggtgagaccggtcttgcctatttcgatacc
tgggccaaggagctggtgcgcacagggtatctgcacaatcacgcgcggatgtggtttgcg
tcgctttggatcttcacgctcaagctgccgtggcggttgggagcagatttcttccttcga
cacttgctggacggcgaccccgcgtcgaacacttgttcgtggcgctgggtggcaggactt
catacgcggggcaagccctacgtggcgcaagcctcgaatatcgcgcggttcagtggtggg
cgatttgcgccccaggagagtgagctcgcaacagaagtgactggcctgatggacgaagaa
ccagaggggcttccgcacgtgaaccccttgcgatctgtcctctcccctgaagaagcaaag
ccgactgcggttcttttgaccgaagaagactgtatgcctgcgtcagcggatcttgcgtca
ctggatattcggggggcggcacgcctatattgcagtcacctgcgctcgccacgcagggtg
gccgccgccgtgtcaacattcgaggaggatgctctggcagataccgttgcgcgcataggt
ctggatgcacagccctgggcggcgtcggagccagaggcgctggctgattgggtgcagtcg
attggggcgcagcagatcttcatgccctatgcaacggtcggcccgctgggagactggatt
gcgcgggcgctgcctttgttgcgggctcggggggtcgcggtagcggaatggcaacgggat
tgggacgggctggtgtggccacatgcaacggccgggtttttcaaggtcaaaaagcgcttg
cctgacatcctgaccaaggccgggctgacatga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
   ROSEOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (29)   

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