KEGG   Setaria italica (foxtail millet): 101769033
Entry
101769033         CDS       T02818                                 
Name
(RefSeq) polyadenylate-binding protein 2
  KO
K13126  polyadenylate-binding protein
Organism
sita  Setaria italica (foxtail millet)
Pathway
sita03015  mRNA surveillance pathway
sita03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sita00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    101769033
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101769033
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sita03019]
    101769033
   03041 Spliceosome [BR:sita03041]
    101769033
Messenger RNA biogenesis [BR:sita03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     101769033
   mRNA cycle factors
    Stress granule specific factors
     101769033
Spliceosome [BR:sita03041]
 Complex C
  Other components
   Complex C specific factors
    101769033
SSDB
Motif
Pfam: RRM_1 PABP RRM_occluded RRM_5 Nup35_RRM RRM_3 RRM_7 DUF134 BRAP2
Other DBs
NCBI-GeneID: 101769033
NCBI-ProteinID: XP_012702992
UniProt: K3Y5T2
Position
VII:complement(24301235..24306939)
AA seq 657 aa
MAAQVAAAVVANGSAGAVPAVVSPGAVGVGVGVAQPLPTTSLYVGDLEGSVTDSQLYELF
SQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPMDAARALEVLNFALLNSKPIRVMYSNRDP
SSRRSGSANIFIKNLDKTIDNKTLHETFSTFGTILSCKVAMDEVGQSKGFGFVQYEKEEA
AQAAIKSLNGMLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTREDLVKIFG
EYGSITSAVVMIGMDGKSKCFGFINFENPDAAARAVQELNGKKINDKEWYVGRAQKKSER
EMELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSCKVMCDQNGL
SKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPPVPM
TPTLAPRLPMYPPMAPQQLFYGQAPPAMIPPQPGYGFQQQLVPGMRPGGPHMPNYFVPVV
QQGQQGPRPGMRRGAGAQGQQPVPSFQQQMVPRARMYRYPTGRNMPEAPAMPGVAGGMIQ
PYDMGGFPVRDAALSPSAQIGTLTSALANATPEQQRTILGENLYPLVEQLEPNQAAKVTG
MLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAHQQNPNTPTSQLAALSLTEGII
NT seq 1974 nt   +upstreamnt  +downstreamnt
atggcggcgcaagtggcggcggcggtggtggcgaacgggagcgcgggcgctgtccccgcg
gtggtgtcgccgggggcggtcggcgtcggggtcggcgtggcgcagccgctcccgaccacg
tcgctctacgtcggcgacctggaggggtccgttacggactcgcagctgtacgagctcttc
agccaggcggggcaggtggtgtcggtgcgcgtctgcagggacgtcacctcgcgccgctcg
ctcggatacgcctacgtcaacttcagcaaccccatggatgctgcaagagcattggaagtg
ctcaactttgctctgcttaacagcaagcccatccgggtgatgtattcaaaccgtgaccca
agcagccgcaggagcggatctgctaacattttcatcaagaatcttgacaagacaatagac
aacaaaactcttcatgagaccttttccacatttggtaccattctctcatgtaaggtagcc
atggatgaagtgggccaatccaaaggctttggttttgttcagtatgaaaaagaagaagct
gcacaggctgctataaaaagtcttaatgggatgcttatcaatgataagcctgtttttgtt
ggaccttttcttcgcaagcaagagcgagatcattcttttgataagacaaaatttaacaat
gtctttgtgaaaaatctgtctgagtctaccacaagggaggatctggtcaaaatttttggt
gaatatggaagtattacaagtgcggttgtgatgattggcatggatggcaaatcaaagtgc
tttggtttcatcaattttgagaatccagatgctgctgcccgtgctgttcaggaacttaat
ggaaagaagataaatgacaaagaatggtatgttggaagagctcagaagaagtcagaaaga
gagatggaactaaaaaggagatttgagcaaagcttgaaagatgctgctgacaagtatcaa
gggctgaacttgtacctcaagaacttggatgatagcattggagatgatcaacttcgtgaa
ttattctctaactttggcaaaattacctcgtgcaaggtgatgtgtgaccaaaatggtctt
agcaaaggctctggctttgttgcattctcaactcgtgaggaagcatctcaggctttgact
gaaatgaatggcaaaatgatatctggaaagccattgtatgttgcatttgcacagcgtaaa
gaagatagaaaagcaatgttacaggcacaattttctcagatgcgccctcctgtaccaatg
acgcccactctggctccacgccttccaatgtaccctcctatggctcctcagcaactcttc
tatggacaagctccgccagctatgataccccctcagccgggatatggtttccagcagcag
cttgttccaggcatgagacctgggggtccccatatgccaaattactttgttccagttgtc
caacagggccaacagggtccacgcccaggtatgaggcgtggagctggggcccagggtcag
caacctgtgccatcatttcagcaacagatggttccacgagcacggatgtaccgttaccca
accggccgcaacatgcctgaagctccagcaatgccaggtgttgctggaggtatgattcag
ccatatgatatgggaggcttccctgtgagagatgcagccttatcaccttctgcccaaatt
gggactctgacttctgcccttgcaaatgctactcctgagcagcaaagaacgatacttggt
gaaaacctatacccactggttgagcaactggaaccaaaccaagcggccaaggtcactgga
atgctattggagatggatcagactgaggttctccacctgctcgagtcccccgaggctctc
aagtccaaggttgccgaggcgatggatgttctccgcaatgtagcccatcagcagaatcca
aacaccccgaccagtcagcttgctgcgttatcactgaccgaaggcattatctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (22)   

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