KEGG   Setaria italica (foxtail millet): 101780813
Entry
101780813         CDS       T02818                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
sita  Setaria italica (foxtail millet)
Pathway
sita03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sita00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101780813
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sita03019]
    101780813
Messenger RNA biogenesis [BR:sita03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     101780813
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     101780813
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind DUF3819 CNOT1_HEAT Glyco_hydro_84_hel
Other DBs
NCBI-GeneID: 101780813
NCBI-ProteinID: XP_004986104
UniProt: K4A4M9
Position
IX:complement(58652264..58672154)
AA seq 2447 aa
MGKGRSFPSVQHSPEGQGPKPLSSPRPLAAGEMIPLTPDVAAELRLLLGDATDSNFDSIR
RELCQLVDCGLDGCILVLQVCLNQRLLTAGEVKNLQSQQNLLSDVFRYCLDKTYFSTCFC
EALKMTALPDGFLETLSNLLELSAAEKVGFGLALLDSEYSEIKLKGQRFSRAQIEELCSN
PNQSVSNDQIHEIAVFLHQSDGLSKHMDTFNNFISLLKVTERPFFAPVANRERDSESTNS
SRHLEMYFGSTDVDFELLLSEIGKEIGMADIVTELGYGCTVDSTHCKEILSVFEPLDDLA
ISKLLGAVVGTHKVLGEAHNTYATFVSAIHNSHTNDSPQLTKWNTDVLVDSINELAPSTN
WVRVMEYLDHDGFNIPDEAAFYLLMSIYARACKDPFPLHAVCGSLWKNAAGQISFLKHAV
SAPTDTFTFAHSSRQLAFPDLAGPSQGNHAWFCLDLLEVLCQLAEVGYTVSVRSMLEYPL
EHCPDLLLVGVSNINTVYNLLQYEVLSCVFPSLLKDTTKGSVVNYLWHTNPYLTLRGFVA
HCDPDYLLRIVDVCHDLKILSAVLDSTPFAFSIKLAAAASRKDYSYLEKWLTEKLSVYRK
GFLEECVNFLKGTMSNTDYILVATTQQPRAIVTNLYWESCPVFIKVLQSHSGHLLSAELL
DELRKLYALYESRNPGSVVRELANSQGGSDDIEVEANTYFHQMFSGQISTDSMIQMLVRF
KESSDKREVSIFNCMISNLFEEYKFFPKYPDKQLKIAAVLFGSLIKHQLVAHVALGIALR
GVLDALRKSVDSKMFMFGTAALEQFMDRVIEWPQYCNHILQISHLRGTHSEMVSAIERAL
AKISSSRNEPNVSNLLSAEQHVSGSSSTEGIEVPESSWLMGTTPAQLGRPIPSFPLQHRQ
HGLLGEKSKVSMSSQNKSILSTQPSLPSSSADSAINPKATVPPSLLASPHQSTSVSTSVH
TTGFLRSRSTSGLPRQPSYTSGFGAALNIETLVAAAEQRETPIETPASEVQDKILFMINN
ISTSNMEAKAKEFNDVLQEQYYPWFAQYMVMKRASIEPNFHDLYLKFFDKVNSKSLNKEI
LKATYENCKVLLRSDLIKSSSEERSLLKNLGSWLGKFTIGRNQALRAKEIDPKSLIVEAY
EKGLMIAVIPFTSKILEPCQSSIAYRPPNPWTMGILSLLAEIYNLPNLKMNLKFDIEVLF
KNLTVDIKDVKPTSLLKDRVREVEGNPDFSNKDVAATQTPVVSEVSSGTISSLTHVELQP
EINITSRAISLPNVLNQYAAPVRVPPTSTVEDENVALMMLEQSSLAQVSPAQTQSPSPSL
FSVNQLMAVIPRDEIRFKINPKLGSLGPQLQYSKIMDLALDKANREIIQPVIQRSVTIAS
RTTKELIVKDYALESDNNTITRSAHLMVGTLAGRLAHVTCKEPLRVALYSHLRNLIQNLM
SGSETIEQLIHMLVNDNLDLGCAIIESVATRQAVEVIDGEIAQSFSQQKKQREATGPAYY
DTYAQGLFDRIPEALRPKPGHLSATQQRVYEDFVHVWHGHGQNVGATSSGPSGAATVSST
LGVPRAYSPNSMSTTSSKFSTVQMGSLTSLTQPTELVSEESVPGIAQFSSVAPAQVAASH
SSVLLGGTFGAASTFSPLASNDPPVGGTTVTTNEISAMVPPTSAADHLGSILPEPLNTGD
ALEKYQQVAQKLEALITNNGKDVEIESVIAAVPDILLRCVSRDEAALAVAQKVFRSLYDN
ASNSAYVTWLLATLVAIRDVCKLVVKELTSWVIYSDEEKKFNIEIIFGLIRSELLNLGEY
NVHLAKLIDGGRNKIATEFAMSLVQTLITQDSVSISELYNVVDALSKLARRPGSPESLQQ
LIETARNNVNTTAGFVVGKDEKVRLSKDKKVLTTRANKEESTANETTMVDPNQVAILFSE
WCQMCDHLSASDVAYSRFVTQLQQDGLLNGDDISERFFRILTELAVTHSLVSEQIVAPGG
SSQQSPQLPQISYFSIDSYAKLVVMMLKYSPLEISSNKGNILSKILSVTVRTIQKEAEEK
KASFNPRPYFRLFINWLYDLTTSDAHHEFQVLSAFANAFHLLQPLRVPAWSFAWLELVSH
RSFMPKLLTCNLQKGWPLFQRLLVDLFKFMEPYLRNAEIPDPVNILYKGTMRVLLVLLHD
FPEFLCDYHFSFCDVIPASCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLAEISIAPRIM
SDVDSALKSKQLKTEVDEYLKRSEGSSFLSDLNKKLLMPQNEAAVAGMHYNVPLINSLVL
YVGIQAVQQLQLNKAIASASVQQINHTPLMDIFQIETATEMFKNLVTSLDTEGRYLLLNA
IANQLRYPNNHTHYFSFIILYLFAEATQEIVQEQITRVLLERLIVNRPHPWGLLVTFIEL
IKNPRYNFWNRPFTHCAPEMERLFESVSRSCAGKAADEGISVQESVL
NT seq 7344 nt   +upstreamnt  +downstreamnt
atgggcaaaggcagatccttcccgtctgtacagcactcccccgagggccaaggccccaaa
cccctctcgtcccctcgccccttggccgccggcgagatgatccccctcactcccgatgtc
gccgcggagctccgcctcctgctgggtgacgccaccgactccaacttcgactccattcgg
cgcgagctctgccagttggttgactgcggcctggatggatgcatcttggtgctccaagtc
tgtttgaatcaaaggttgctgactgctggggaggtcaagaacctccagtcgcaacagaat
cttttatctgatgttttcagatattgtttggataaaacatacttcagcacctgtttttgc
gaggcgctcaagatgacagcacttcctgatggttttcttgaaaccttgtcaaatctgctg
gaactctcagctgctgagaaagttggtttcggacttgcgctgttggattctgagtattca
gagataaagctgaaagggcaacggttttcaagggctcaaattgaagagctgtgctcaaac
cctaaccaatctgtatcaaatgaccaaatccatgaaattgctgtgtttctgcatcagtct
gatggcctgtcgaagcatatggatacttttaataactttatatctttactaaaagtcacg
gaaaggccattttttgcacctgtcgcaaatagggaacgtgatagtgaatcaacaaattct
tcaagacatttggagatgtactttggtagcacagatgttgattttgagttgcttctctct
gagattgggaaagaaataggcatggctgacattgtaaccgagttgggttatggatgtact
gttgacagtactcactgtaaggaaatactttctgtttttgagcctcttgatgatcttgca
atatctaagttgcttggggctgttgttggcactcataaggttcttggagaggcccataac
acatatgcaacatttgtatctgctattcataacagccacacgaacgactcacctcagctt
actaaatggaacacagatgttcttgtggattcaatcaatgaactcgccccaagtacaaac
tgggtgcgtgtaatggaatatcttgatcatgatggcttcaatatacctgatgaagcagcc
ttttatctattgatgtctatatatgcgcgtgcctgcaaggatccctttccgcttcatgct
gtttgtgggtcattgtggaagaatgcagcaggccagatatcttttttaaagcatgcggtt
tctgctccaactgatacatttacatttgcacattcttccaggcaactggcatttccagac
ttggcaggtcctagtcaaggtaatcatgcatggttctgccttgaccttctagaggtttta
tgccaacttgctgaagttggatatactgtgtctgtacgatcaatgcttgagtatccactt
gagcattgcccagacctcctacttgttggtgttagcaacatcaataccgtgtataatctc
ctccagtatgaagtactatcctgtgtatttccttctctactgaaggacacaacaaagggc
agtgtggtgaattatctttggcatacaaacccatacctcacacttcgagggtttgtagct
cattgtgatccagattatttgctaagaattgttgatgtgtgccatgacttgaagattcta
tctgctgtccttgattctactccatttgcattttccattaaattggctgctgctgcctcg
aggaaagactacagctatcttgagaaatggctgacagaaaagttatctgtatacaggaaa
ggttttcttgaggaatgtgttaatttcctgaaaggaactatgagcaacacagattatatc
ttagtggctacgacacaacaacctcgagctattgttacaaacttatattgggagtcttgt
cctgtcttcataaaggttcttcagtctcactctgggcatctcttatccgccgaactattg
gatgaactaaggaaactttatgctctatacgaatcgaggaatcctggttctgttgtaaga
gagctcgctaattcacagggaggatcagatgacattgaagtagaggctaatacgtacttt
caccagatgttctctggacagataagcactgattctatgatacaaatgcttgttcgcttc
aaagaatcttcagataagagggaggtatcaattttcaattgtatgatctcgaatcttttt
gaagaatataaattttttcccaagtatcctgataagcagcttaagatagcagctgttctg
tttggatctcttatcaaacatcaacttgtggctcacgttgcacttggaattgctctgcgt
ggtgtccttgatgccttgcgcaaatctgttgattcaaagatgtttatgtttggtacagca
gcactggagcagtttatggaccgcgtcatagagtggccacaatactgtaatcatatattg
cagatttcgcatcttcgtggaacacattctgaaatggtttctgctattgagagagccctt
gccaaaatttcgtcaagtcgaaacgagccaaatgtcagcaatctgctttctgcagagcag
catgtttctggttcatcatccactgaaggcatagaggtgcctgaatcatcatggctgatg
ggtacaaccccagctcaactaggaaggcctattccttcatttcctttgcaacataggcag
catggtcttcttggggagaagtctaaggtttctatgagttcgcagaacaagagcatttta
tccactcaaccttccctcccttcatcatctgctgattcagctattaacccaaaggcaact
gttccaccctctttactagcttcacctcatcagtctaccagtgtgtcaacgagtgtgcat
actactggattcctgcgttctcgaagtacctcaggattgcctaggcaaccttcatacact
agtggatttggagctgctttaaatattgagacacttgttgcagcagcggaacaaagagag
acaccaattgagacacctgcatctgaagttcaggataagattctttttatgatcaacaat
atatctacctcaaacatggaagctaaggcaaaggagtttaatgatgtcctacaggaacag
tattatccttggtttgcacaatacatggtcatgaaaagggcaagcattgaaccgaatttt
catgacctgtatttgaagttctttgataaagtaaactccaaatccttgaataaggaaata
ctgaaagctacatatgagaactgcaaggtcttgttaagatcagaccttatcaaatctagt
tctgaggagcgttccttgctaaaaaacttaggcagctggttgggaaagttcaccattggt
aggaaccaggcactaagggctaaggagattgacccaaaatctcttattgtggaggcttac
gagaaaggattgatgattgcagtcataccattcacttcaaagattcttgaaccttgccag
tcaagtatcgcatatcgtcctccaaatccctggaccatgggaattttaagtctacttgca
gagatttataatctaccaaacctcaaaatgaatctgaaatttgatattgaggttctcttt
aagaaccttactgtggacataaaagatgttaaaccaacttccctgcttaaagatcgagtg
cgcgaagttgagggaaatccggatttttcaaataaagatgttgctgcaactcaaacccct
gtggtttcagaagtctcttcggggaccatctcttcactaactcatgtggaactgcagcct
gagatcaatatcacatcccgtgctataagtcttccaaatgtgctgaatcagtatgctgcc
cctgtacgtgtgcctccaaccagcacagtggaagatgaaaacgttgctctgatgatgctt
gagcaatcttcactggcccaggtttcgccagcacaaacacaatcaccatcaccatctctg
ttctctgttaatcagcttatggcggtgattccacgtgatgagatacgcttcaaaataaat
ccaaagcttggctcgcttggtccacaattgcagtatagcaaaattatggatttagctttg
gataaggctaacagggagataatacagcctgtgattcaaagaagtgtgacaatagcaagc
cgaactacaaaagaacttattgtgaaggattatgcactggagtctgataacaatacgata
actcgttctgcgcatttgatggtcgggactttagctggaaggctggcacatgttacttgc
aaggaacctcttcgtgtcgccctatattcccatcttcgaaatctcattcagaaccttatg
agtggcagtgaaactattgagcaacttattcacatgctagtcaacgacaatctggatctc
ggctgtgccattattgagtctgtggcaacacgtcaggctgttgaagtgattgatggagaa
atagcgcagtcattttctcaacaaaagaaacaaagagaggcaactggtcctgcatattat
gatacttatgctcaagggctatttgatcggatccctgaagcactacgtcctaagcctgga
catctatctgctacccaacagagagtgtatgaggactttgttcacgtgtggcatggccat
ggtcaaaatgttggtgctacaagttctggtccatctggtgctgctactgtgtcaagcact
cttggtgtacctcgagcttacagtccaaattcaatgtcgacaacctccagtaaattttca
actgttcaaatgggttcactaacatctttaactcagccaacagaactggtgtctgaggaa
tcagttcctggtattgcacaattttcgagtgttgctcctgcccaagttgcagcaagccat
tcttctgtcctacttggtggaacctttggtgctgcatccacattttctcctttggcatct
aatgaccctcctgttggtggaacaacagtcacaaccaatgaaataagtgctatggtgcca
cctacatctgctgcagaccacctgggatctattttacctgaacctttgaatacaggggat
gctttggagaaataccaacaggttgcacaaaagttggaagccttgatcaccaataatggc
aaagatgtggaaattgagtctgttattgcggcagttccagatatcttactcaggtgtgtt
agccgggatgaggctgcattagctgttgcgcagaaggttttcagaagtttgtatgataac
gcttcaaatagtgcgtatgtcacatggcttctagcgaccttagttgcgataagagatgtc
tgcaagcttgttgtcaaagagttaacaagctgggtaatctattccgatgaagagaagaag
tttaacattgaaatcatatttggccttattcgttctgagttgctgaatcttggggagtac
aatgttcatttggcaaagctgattgatggtggaagaaataaaattgcaacggaattcgca
atgtcacttgtccaaacattgattactcaagattctgttagcatctcagagctttacaat
gttgttgatgcgctatcgaagcttgcaaggagaccaggttcacctgaatcgttgcaacaa
ttgattgagactgcaaggaataatgtgaacactactgctggttttgttgttgggaaggat
gaaaaggtcagactgtcgaaagataaaaaggttctaacaacccgagcaaacaaagaggaa
agcactgctaatgaaactacaatggttgatccaaaccaggttgcaatcctgttttctgag
tggtgtcagatgtgtgatcatctaagtgctagtgatgtggcatacagtcgttttgtcaca
cagttgcagcaggatggcctgctgaatggagatgatatttctgaacgcttcttccgtatt
ctcacggaacttgctgttacacactctctagtctcagagcagatcgttgccccgggtgga
tcatcccagcaatcaccacagttaccccaaatttcatacttctccattgattcatatgca
aagcttgtcgtcatgatgctcaagtactctccactggaaatatcatcgaataaaggcaat
atactttccaagattctatctgttacagtgaggaccattcagaaagaagctgaagaaaag
aaagcttcatttaatcctcggccatactttcggttgtttataaattggctttatgacctt
actacttcagatgcccaccatgaatttcaggttttgtctgcatttgcaaacgcattccac
ctgctacaacccttgagagttcctgcctggagctttgcttggcttgagttggtgagtcac
aggagcttcatgccaaaactgctgacgtgcaatttgcagaaaggttggccgttattccag
cgtctacttgttgatcttttcaaattcatggagccgtatctaagaaatgctgaaattcca
gatccagtgaacattttatacaaaggaactatgagagttctgcttgtactgctgcatgac
tttcctgaatttctttgtgattatcacttcagtttctgtgatgtgattcctgcaagttgc
attcaaatgcgcaatgtcattcttagtgcttttccacgcaacatgagacttccagatcct
tctactccaaatctaaagattgatttgctggctgaaatttccatagctccacgaatcatg
tcagatgttgatagtgccctcaaatcaaagcagttgaagactgaggtggatgagtatctc
aagagatcggaaggctcttccttcctaagtgacctgaataaaaaattgctgatgcctcag
aatgaagcagctgttgctgggatgcactacaatgtgcctcttatcaattcacttgttctt
tatgttggcatccaagctgtgcaacaactgcaactcaacaaggccattgcatctgcatca
gtacagcagattaaccatacgcctctgatggacattttccagattgaaacagctactgag
atgttcaaaaatcttgtaacaagcttggatacagagggccgctaccttcttttgaatgca
atcgctaaccaactgcgctacccaaataaccatacacactacttctccttcattattctg
tatctatttgccgaggctacccaggaaattgtccaggagcaaataacgagggttcttctg
gaacgtctaatagtgaatcgcccccatccttgggggttacttgttactttcatcgaattg
ataaagaatccgcgttacaacttttggaaccgaccttttacacactgcgcacctgagatg
gagagactgtttgagtcggtgtcaaggtcctgcgccggaaaagctgcagacgaaggaatc
agtgttcaggaatcggtgttgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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