KEGG   Stappia indica: GH266_03590
Entry
GH266_03590       CDS       T06350                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
siw  Stappia indica
Pathway
siw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:siw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GH266_03590 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:siw03019]
    GH266_03590 (rnr)
   03016 Transfer RNA biogenesis [BR:siw03016]
    GH266_03590 (rnr)
Enzymes [BR:siw01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     GH266_03590 (rnr)
Messenger RNA biogenesis [BR:siw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     GH266_03590 (rnr)
Transfer RNA biogenesis [BR:siw03016]
 Prokaryotic type
  tRNA degradation factors
   GH266_03590 (rnr)
SSDB
Motif
Pfam: RNB CSD2 S1 OB_RNB RNase_II_C_S1
Other DBs
NCBI-ProteinID: QGZ37213
UniProt: A0A857CDQ4
Position
776079..778316
AA seq 745 aa
MAFLADNPGMAGKREIARHFGITGGARIYLKRLLREMADDGLLEKRQKRLSRPGDLPPVL
VVLVTGRDSDGELLAEPASWDVDEHGTAPRILVLPDPRKSDMRAPGLGDRLLVRLTEDPT
GEEATRAGRIIKLLDRQASAVLGILRQAGGRTFLEPIDRKQKELEIDTSDLKGAADGDLV
GAQVTKVGRYGLPRGRIVRRIGAMHSEMAVSEIALHTHGIPHDFPDRVIEAAENAKPATL
SGREDWRKLPLITIDPADAKDHDDAVHAVADEDPANEGGHVATVAIADVAYYVRPGEPLD
REAHLRGNSVYFPDRVIPMLPEALSNGLCSLKEGEDRPAMAVRMVFDKDGRKLRHSFHRV
TMRSALKISYDKAQAAIDGEPGIVADAVLEEILKPLWAAYACLKRGREAREPLDLDLPER
KIRLKPDGTVDGVYVPNRLDAHKLIEEFMIQANVAAAETLEQHGVPLLYRVHDASSPEKL
EALKEFLGTLSIRLASGGGIRPAAFNGILKKVVGTPEAELVNQVILRSQAQAEYSPQNIG
HFGLNLRRYAHFTSPIRRYADLIVHRGLIRALKLGDDGLPDGMEGKLEMIGADVSAAERR
AMLAERDTVDRLIALWLADQVGTRFNGRISGVVKSGLFVRLDDTGADGFVPASTIGDDYY
HYDESSHSMSGRTTGETYSLGDRVEVRLVEAAPYAGALRFELLSEGHYHKRRSARERTME
RNRKHTSGGAGRSPSKGRPSKGRRK
NT seq 2238 nt   +upstreamnt  +downstreamnt
atggccttcctcgccgacaatcccggcatggccggcaagcgcgagatcgcgcggcatttc
ggcatcacgggcggcgcccgcatctacctgaagcgcctgctgcgcgagatggccgacgac
gggctgctggaaaagcggcagaagcgcctgtcgcgccccggcgacctgccgccggtgctg
gtggtgctggtcaccggccgcgacagcgacggcgagctgctggccgagccggcaagctgg
gacgtggacgagcacgggaccgcgccgcgcatcctggtgctgcccgacccgcgcaagtcc
gacatgcgcgcccccggcctcggcgaccggctcctggtgcgcctgaccgaagatccgacc
ggcgaggaagcgacccgcgcgggccgcatcatcaagctgctcgaccgccaggcctcggcc
gtgctcggcatcctgcgccaggcgggcggacgcaccttcctggagccgatcgaccgcaag
cagaaggaactcgagatcgacacgagcgatctcaagggcgcggcagacggcgatctcgtc
ggcgcgcaggtcaccaaggtcggccgctacgggctgccgcgcgggcgcatcgtccgccgc
atcggcgccatgcattcggaaatggcggtctccgagatcgccctgcacacccacggcatc
ccgcacgacttccccgaccgggtgatcgaggccgcggagaacgccaagcccgcgacgctc
tcgggccgcgaggactggcgcaagctgccgctgatcaccatcgacccggccgacgccaag
gaccacgacgacgcggtgcatgcggtggccgacgaggacccggccaacgagggcggccat
gtcgccaccgtcgccatcgcggacgtggcctattacgtccgccctggcgagccgctcgac
cgcgaggcgcatctgcgcggcaactcggtctatttccccgaccgggtgatcccgatgctg
cccgaggcgctgtccaacggcctgtgctcgctgaaggaaggcgaggaccgcccggccatg
gccgtgcgcatggtcttcgacaaggacgggcgcaagctgcgccacagcttccaccgggtg
acgatgcgctcggcgctgaagatctcctacgacaaggcgcaggccgccatcgacggcgag
cccggcatcgtcgccgatgcggtgctggaagagatcctgaagccgctctgggccgcctat
gcgtgcctgaagcgcggccgcgaggcgcgcgagccgcttgatctcgacctgcccgagcgc
aagatccgcctgaagccggacggcacggtggacggcgtctacgtgcccaaccgcctcgac
gcgcacaagctgatcgaggagttcatgatccaggccaacgtggcggcagccgagacgctg
gagcagcacggcgtgcccctgctctaccgcgtccacgacgcctcgagcccggagaagctg
gaagcgctgaaggagttcctggggacgctcagcatccgcctcgcctccggcggcggcatc
cgcccggcggcgttcaacggcatcctgaagaaggtcgtgggcacgcccgaggccgaactg
gtcaaccaggtgatcctgcgcagccaggcccaggcggaatactcgccgcagaacatcggc
catttcggcctcaacctgcgccgctacgcccatttcacctcgccgattcgccgctatgcg
gatctcatcgtccatcgcggcctgatccgggcgctgaagctgggcgacgacgggctgccg
gacggaatggagggcaagctggagatgatcggcgcggacgtgtccgccgccgagcgccgg
gcgatgctggcggagcgcgacacggtcgaccggctgatcgccctgtggctggccgaccag
gtcggcacccgtttcaacggacggatctccggcgtcgtcaagtcaggcctgtttgtccgc
ctcgacgacaccggtgcggacggtttcgtgcccgcttcgaccatcggcgacgactactac
cattacgacgaatcgtcgcattcgatgagcggcagaaccacaggcgaaacctactctctc
ggggatcgggtggaggttcggctggtcgaggcggccccttatgcaggtgccctgcggttt
gaacttttgagcgaaggtcactatcacaagagacggagtgcgcgcgagcgcaccatggag
cgcaaccgcaagcacacgagcggcggcgccggccgctccccgtcgaagggtcggccatcg
aaaggacggcgcaaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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