KEGG   Shewanella japonica: SJ2017_2755
Entry
SJ2017_2755       CDS       T04959                                 
Name
(GenBank) tRNA pseudouridine synthase A
  KO
K06173  tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
Organism
sja  Shewanella japonica
Brite
KEGG Orthology (KO) [BR:sja00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sja03016]
    SJ2017_2755
Enzymes [BR:sja01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.12  tRNA pseudouridine38-40 synthase
     SJ2017_2755
Transfer RNA biogenesis [BR:sja03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    SJ2017_2755
 Prokaryotic type
    SJ2017_2755
SSDB
Motif
Pfam: PseudoU_synth_1 DUF2344
Other DBs
NCBI-ProteinID: ARD23036
Position
complement(3256302..3257087)
AA seq 261 aa
MRVALGVEYDGSQYFGWQRQKEVVSVQEKIEAALSSIANESIEIICAGRTDSGVHGTGQV
VHFDTQSTRQMSAWALGVNAKLPDDIAIRWAKEVDDTFHARFSATARRYRYLIDNSEFRP
GILRHGLSHYHYALDHQLMHQAAQLFVGEHDFTSFRALQCQAHSPVRTIEFVNVTRQGAF
IIVDIKANAFLHHMVRNIVGTLIEIGQSNQKVEWVNELLALKDRKFAAPTSKPNGLYLVD
VTYPEHYELPKPPMGPLFMLD
NT seq 786 nt   +upstreamnt  +downstreamnt
atgcgtgtggcgttaggtgtcgaatacgatggtagtcaatatttcggttggcaaagacaa
aaagaagttgtgtctgtgcaagaaaaaatcgaagccgctttatcatcaatagccaatgaa
tccattgaaattatttgtgcaggtcgaacagactcaggtgtgcacggtactggacaagtg
gtccattttgatacccaatctacacgtcaaatgtcggcgtgggccttaggggtcaatgcc
aaattaccagatgatattgccattcgatgggcaaaagaagtcgatgatacatttcatgct
cgcttttctgccacggcgcgtcgatatcgttatcttattgataatagtgaatttaggcct
ggtatattacgtcacggattaagtcactatcattacgcacttgaccatcaattaatgcat
caagcggcgcaactttttgttggcgaacatgactttactagttttcgcgcgttacagtgc
caagctcatagtccagtaagaacgatagaatttgtgaatgtcactcgccaaggcgcattc
attattgtggatattaaagcgaatgcttttttacatcatatggtgcgaaatattgttggt
acactcatcgagattggacaatctaatcaaaaagtcgagtgggtcaatgagcttttggcg
ctaaaagatcgcaagtttgccgcaccaacatctaagcctaatggtctatatttagtggat
gtaacttaccctgagcattatgagttacctaagccacctatggggccattatttatgttg
gattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (10)   

Download RDF
DBGET integrated database retrieval system