KEGG   Streptococcus pneumoniae JJA (serotype 14): SPJ_0916
Entry
SPJ_0916          CDS       T00873                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
sjj  Streptococcus pneumoniae JJA (serotype 14)
Pathway
sjj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sjj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPJ_0916 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sjj03019]
    SPJ_0916 (rnr)
   03016 Transfer RNA biogenesis [BR:sjj03016]
    SPJ_0916 (rnr)
Enzymes [BR:sjj01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     SPJ_0916 (rnr)
Messenger RNA biogenesis [BR:sjj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SPJ_0916 (rnr)
Transfer RNA biogenesis [BR:sjj03016]
 Prokaryotic type
  tRNA degradation factors
   SPJ_0916 (rnr)
SSDB
Motif
Pfam: RNB OB_RNB CSD2 S1 RNase_II_C_S1 ASL_C CSD
Other DBs
NCBI-ProteinID: ACO19159
UniProt: C1CDX0
Position
874411..876765
AA seq 784 aa
MKDRIKEYLQDKGKVTVNDLAQALGKDSSKDFRELIKTLSLMERKHQIRFEEDGSLTLEA
KKKHEITLKGIFHAHKNGFGFVSLEGEEDDLFVGKNDVNYAIDGDTVEVVIKKVADRNKG
TAAEAKIIDILEHSLTTVVGQIVLDQEKPKYAGYIRSKNQKISQPIYVKKPALKLEGTEV
LKVFIDKYPSKKHDFFVASVLDVVGHSTDVGIDVLEVLESMDIVSEFPEAVVKEAESVPD
APSQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGS
ALDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQVDRLTQSAIMEIDKHGRVVNYTI
TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD
TNEAKILVDKQGKPVDIVLRQRGIAERMIESFMLMANETVAEHFSKLDLPFIYRIHEEPK
AEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSMQQARYS
EHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGRSKEIAEHFEQVIPEIATQSSNR
ERRAIEAEREVEAMKKAEYMEEYVGEEYDAVVSSIVKFGLFVELPNTVEGLIHITNLPEF
YHFNERDLTLRGEKSGITFRVGQQIRIRVERADKMTGEIDFSFVPSEFDVIEKGLKQSSR
SGRGRGSNRRSDKKEDKRKLGRSNDKRKHSQKDKKKKGKKPFYKEVAKKGAKHGKGRGKG
RRTK
NT seq 2355 nt   +upstreamnt  +downstreamnt
atgaaagatagaataaaagaatatttacaagacaagggaaaggtgactgttaatgatttg
gctcaggctttgggaaaagacagttccaaggattttcgtgagttgattaaaaccttgtcc
ttaatggaaagaaagcaccagattcgctttgaagaagatggcagtctgaccttggaagcc
aagaaaaaacatgagattaccctcaaggggatttttcatgcccataaaaatggttttggt
tttgtcagcctagaaggggaagaggacgacctttttgtagggaaaaatgatgtcaactat
gctattgatggtgataccgtcgaggtagtgattaagaaagtcgctgaccgcaataaggga
acagcagcagaagccaaaattattgatatcctagaacacagtttgacaacagttgtcggg
caaatcgttctggatcaggaaaagcctaagtatgctggctatattcgttcaaaaaatcag
aaaatcagtcaaccgatttatgttaagaaaccagccctaaagttagaaggaacagaagtt
ctcaaggtctttatcgataaatacccaagcaagaaacatgatttctttgtcgcgagtgtt
ctcgatgtagtgggacactcaacggatgtcggaattgatgttcttgaggtcttggaatca
atggacattgtatccgagtttccagaagctgttgttaaggaagcagaaagtgtgcctgat
gctccgtctcaaaaggatatggaaggtcgtctggatctaagagatgaaattacctttacc
attgacggtgcggatgccaaggacttggacgatgcagtgcatatcaaggctctgaaaaat
ggcaatctggagcttggggttcacatcgcagatgtttcttattatgtgaccgaggggtct
gcccttgacaaggaagcccttaaccgtgcgacttctgtttacgtgacagaccgagtggtg
ccaatgcttccagaacgactatcaaatggcatctgctctctcaatccccaagttgaccgc
ctgacccagtctgctattatggagattgataaacatggtcgtgtggtcaactataccatt
acacaaacagttatcaagaccagttttcgtatgacctatagcgatgtcaatgatatccta
gctggcgatgaagaaaagagaaaagaatatcataaaattgtatcaagtatcgaactcatg
gccaagcttcatgaaactttagaaaacatgcgtgtgaaacgtggagctctcaattttgat
accaatgaagcgaagattttagtggataaacaaggtaagcctgttgatatcgttcttcgg
cagcgtggtattgccgagcggatgattgagtcttttatgttgatggctaatgaaacagtt
gccgaacatttcagcaagttggatttgccttttatctatcgaattcacgaggagcctaag
gctgaaaaggttcagaagtttattgattatgcttcgagttttggcttgcgcatttatggg
actgccagtgagattagtcaggaggcacttcaagacatcatgcgtgctgttgagggagaa
ccttatgcagatgtattgtccatgatgcttcttcgctctatgcagcaggctcgttattcg
gagcacaatcacggccactatggactagctgctgactattatactcactttaccagtcca
attcgtcgttatccagaccttcttgttcaccgtatgattcgggattacggccgttctaag
gaaatagcagagcattttgaacaagtgattccagagattgcgacccagtcttccaaccgt
gaacgtcgtgccatagaagctgagcgtgaagtcgaagccatgaaaaaggctgagtatatg
gaagaatacgtgggtgaagagtatgatgcagttgtatcaagtattgtcaaattcggtctc
tttgtcgaattgccaaacacagttgaaggcttgattcacatcactaatctacctgaattt
tatcatttcaatgagcgtgatttgactcttcgtggagaaaaatcaggtatcactttccga
gtgggtcagcagatccgtatccgtgttgaaagagcggataaaatgactggagagattgat
ttttcattcgtacctagtgagtttgatgtgattgaaaaaggcttgaaacagtctagtcgt
agtggcagagggcgtggttcaaatcgtcgttcggataagaaggaagacaagagaaaatta
ggacgctcaaatgataagcgtaagcattcacaaaaagacaagaagaaaaaaggaaagaaa
cctttttacaaggaagtagctaagaaaggagccaagcatggcaaagggcgagggaaaggt
cgtcgcacaaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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