KEGG   Sphingobium indicum UT26S: SJA_C1-22330
Entry
SJA_C1-22330      CDS       T01201                                 
Name
(GenBank) hemolysin-type calcium-binding repeat protein VCBS
  KO
K20276  large repetitive protein
Organism
sjp  Sphingobium indicum UT26S
Pathway
sjp02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:sjp00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    SJA_C1-22330
SSDB
Motif
Pfam: Big_9 DUF5801 Cadherin_4 Cadherin_5
Other DBs
NCBI-ProteinID: BAI97067
NITE: SJA_C1-22330
UniProt: D4Z385
Position
1:complement(2243372..2252110)
AA seq 2912 aa
MDFERDWDSKGTVDHQQALHPEAAALAAKGKAVHPGKMHHADVVRTVAPNPDGTVVLPAG
TDINQIEVSGRNLIVHLPDGTDMVILDGAVVMPRLVVGDVEIPSVNLAALLIGEEPQPAA
GPPRSSGGNFIGPDGNVGDPHGLGDLLPPTELLFTQPETREILPVPLQDDEEPAVTIITP
NQPAGATAATAGVSEASLPARGSEPAGSAAASDSERTTGTIAITATDGLAGVTINGVAIA
TVGQTVTTPLGVLTITSITPSAIGYSYVLSDNVVGAPPAEVFTVVVTDSDGDQASATLTI
SIADDAPTAVNDADSVTEDGPLVADGNVLTGSGGSDANATDGVADIQGADGAVVSTTGSF
QGSYGTLTLAASGAYSYTLANGNAAVQFLVPGQTLTDSFSYTITDADGDTSTATLTITIN
GADDGVTITGLNGAPGIEGAEVVLLENDLSDGSSPDAAGLTKTGSFGVNGPDGLSSVTVG
GVSVLANGAFVAGQVVTTPVGTLTITGFTATATQGGVPTAGTFTYSFVLTDNSLGHGAAG
ADSILQSFAVVVTDRNGSAANASVDVRIVDDVPTANNDVDGVAAGAYGPETGNVITGAGT
VSGAAGADVRGADGAVVSTTGTFEGAYGTLTLNADGSYVYVRAAGTPGGVSDSFSYTLRD
GDGDTSTATLRIDIANSNVMIVSIPKVGEGTIVDESGLVNPMGSNAGSGVDTTDGTITYT
APDGPATVTINGQPVIIGTTIATDKGILTITGLNEGQIDYTYELTTNTTGDDVTDSFVVT
VTDVDGDTATDTLTITILDDVPTATNDTDSVREDGPLVADGNVITGSGGSDANGTDGNAD
VQGADGAQVSAIAFGGTAGTVGAPLAGLYGSLVIQANGSYAYTLDNENGVVQGLDKTETL
TETFTYTLTDGDGDARTATITITIQGSDDGVTINGLDGEGAEETVFENDLPGGSSENVAA
LTQTGGFTLSAPDGVATVTVGGQPIFGAGGFIGGVTIANAYGTLSITGFTPTLGADGDVI
GGTVSYSYVLTDNTLLHSGVNDGSLTDSFAVVVTDTDGSTDSASLDIRVVDDVPTAVNDV
AGQLTENAAVTIDVFANDVAGADGVNLASGVALESGAAKGTVVYQGNGVFLYTPNAGAEG
SDSFTYTITDGDGDKSTATVTINLLQDSTPTVSVTDMTVSEAGLPGGTQQAGNSETATGS
MTIATGGDTLTKVEVQDKNGAWVDVTGATASTPVVVAGAAGALTVTSDGAGHYSYSYTLA
VNDPAHPDNVTSDGDGISGAADPKAGDAFAVRVTDSDGDVSPADTINVTVLDDAPIATAD
SGSVSEGGSLIVAAADGVLDNDQPGADGYAPGVVGVAKGSDPSSPVSGQVGTAVAGDYGT
LTLFADGSYRYDATPNAISADQQDVFVYTIRDADGDLATTTLTIDVANVALAPDNQTKTV
FEAALDTGITGSDIAAGSVTGSAPGQPTETATGQLNVAGAVSYTLTSSATGSHGQLQLNA
NGSYTYTLTSPVDGPTANDGPLTFAGAEVFTYQAVDGSGNIANGTITIDVVDDVPTAVND
ALLTVAEDGADIGGNVLTNDTPGADGATLTSVTIGGVTTAINAVGTTNVSGAFGAYTFTA
AGAWTFNPSTNLNNASGVSAGFSYVITDGDGDQSTAVQPITVTDGANPIAGAPISLALDD
QNLAGGTTQGNPDFVQDNVSFTAGSDALTGFAFATDLSALGGGLTWNRVSATLIEGWDGP
VGTGVKIVALTLTAPASIGAGLSGNVQVTATLLDNYDSHPNIALDDSVSLGSVGVVASDQ
DGDSATATVNLSVSDDVPQAVNDGQLAIVDDNASGVVVGTVAGLLGNDVFGADGPGSPAI
AIGTGNLGGTISIVGGNLVYTSHHNIAAPYASIGETFTYTIKDGDGDTSSATFSVLLTDT
GPSISAAAAAFTVDEDGLANGVTQPVTGDVDGADIVKTGTLAGLNFGNDGAGNIVLGAVA
DTGLRTLSNHVIQTIWDGTSHTLTGKDAVTGDNIFTLQITDVASGAYRFELLAPVKHSDP
ASEDDKSFTVAVTVTDAENESASGTISVTIDDDSPAVTATLPAAGSLVVDESNLAFDATA
SFAGNFTALYGADGKGSLSYSLGVSAQGAATNLFDTATGNRVYLFVESGKVVGREGTSSG
NAAGGPVVFQLTVDALGAVTLDQQRAVLHTPDTGPNQAIGLDVGSLITLTATAVDGDADT
VSQQINFGQTISFLDDVGTLGAFSNITVVNGANVVGNGTFSYNAGADGHGSFAITGPVLP
GISYTTTQNATGALLTATTDPDGPGGNPPVTVFTLQVNANGTSVFTLVTPQAATSETISL
LGLSAGGPTPFVQTADGRVEFTGNGNGVNSSTQGFGVDNQFVGNGENFTIEFHNPGQAGD
QAATVNPDMVSSIILKNDNINGSLGIKVTVYNDVTGQSEVVYTNFNVTGTSTLIDPVMSE
FNRVSIEGVGGSGQGVRFTSLVINKTILPSDIDLHFTVQATDKDGDVTSTSTLNVFVDAT
SPTPPVAIDLNGDGLHFVGLDAGVTHDYGNGAVATAWVSSEDGLLGHVTGKGIDIVFTDD
APGAQTDLEGLRLAYDSNGDGKLDTADTAFAEFGVWQDANGNGAVDQGEFKSLTDLGIAS
IDLNSDGKTYSAANGDVTVLGEASFTRTDGTKGTVGDVIFATGSSDASKTTESTASGFNQ
ALVAASLVAVAGAAEAPAEQQPAPTATESAAPVTETAPAVTVEAEPAATQESAPTTLAAN
DDQATHEQPAPTGHAAEEAAPDHATLSDGDAHVSTVETADAPQPDLSGHQGLLAQSIDLP
PAFDGNAAAVLAAQQAAPAANAADVVKEALGAHDAPNIDALLAALPGGEHASTPILLNPV
AGEAVDSGHLAAATAIFEAAMVAHEAMAVAHG
NT seq 8739 nt   +upstreamnt  +downstreamnt
atggatttcgagcgcgattgggatagcaaaggcaccgtcgaccatcagcaggcccttcat
ccggaagcggccgccctggcggcgaagggcaaggcggtccatcccggcaagatgcatcat
gcggacgtcgtgcggacggtcgcgcccaatcccgacggcaccgtcgtgctgcccgccgga
accgacatcaaccagatcgaggtttcgggacgcaatctgatcgtccacctgcccgacggc
accgacatggtgatcctggacggcgcggtggtcatgccgcgcctggtcgtgggcgacgtc
gaaattccctccgtcaacctggcggccttgctgatcggggaggagccgcagcccgcagcg
ggtccgccgcgcagctccggcggcaatttcatcggcccggacggcaatgtgggcgacccc
catggcctgggcgacctgctgccgcccaccgaattgctgttcacccagccagaaacgcgg
gagatcctgccggtcccgctgcaggatgatgaagagccggcggtcaccatcatcaccccc
aatcagccggccggcgccactgctgccacggccggggtgagcgaggctagccttcccgcg
cgcggcagcgagcctgccggttcggcggccgccagcgatagcgagcgcactacgggcacc
atcgccatcaccgccaccgacgggctggcgggcgtcaccatcaacggcgttgcgatcgcc
actgtcggccagacggtcacgacgccgctcggcgtcctcaccatcacctcgatcacgccg
tccgccatcggctacagctatgtgctgagcgacaatgtagtgggcgcgccgcccgccgaa
gtcttcaccgtcgtcgtcaccgacagcgatggcgatcaggcgagcgccaccctgaccatc
tccatcgcggatgacgctccgaccgccgtcaacgacgctgacagcgtgaccgaggatggc
ccgctggtcgccgacggcaatgtcctgaccggcagcggcggcagcgacgcgaacgcgacc
gacggcgtcgccgacatccagggcgcggacggcgcggtcgtgtcgaccaccggcagcttc
cagggcagctacggcacgctgacgctggccgcgtcgggcgcctacagctacacgctggcc
aacggcaatgcagcggtgcagttcctggtgcccggacagacgctgaccgacagcttcagc
tacacgatcaccgatgccgatggcgacacctccacggcgacgctgaccatcaccatcaac
ggcgcggatgacggcgtcaccatcaccggcctgaacggcgcgccggggatcgagggcgcc
gaagtcgtgctgctggaaaacgacctgtccgacggcagttcgcccgatgcggctggcctc
accaagaccggctcgttcggcgtcaacggccctgacggcctgtcgagcgtcaccgtcggc
ggcgtgtcggtgctggcgaacggcgccttcgtcgcggggcaggtggtgacgacgccggtc
ggcacgctcaccatcaccggcttcaccgccaccgccacccagggcggcgtgcccacggcc
ggaaccttcacctacagcttcgtgctgaccgacaacagcctgggccatggcgcagcgggc
gcggacagcatcctgcagagcttcgccgtggtggtgaccgaccgcaacggatcggccgcc
aacgcctcggtcgatgtgcgcatcgtggacgacgtgccgaccgccaataatgatgtcgac
ggcgtcgccgccggcgcctatggcccggaaaccggcaatgtcatcaccggggcgggcacc
gtttccggcgcggcgggcgccgacgtcaggggcgcggacggcgcggtcgtttcgaccacc
ggcacgttcgagggcgcttacggcacgctgacgctgaacgccgacggcagctatgtctat
gtccgcgcggccggaacgccgggcggggtgagcgacagcttcagctacacgctgcgcgac
ggcgacggcgacacctccaccgccacgctgcggatcgacatcgcgaacagcaatgtcatg
atcgtctccatcccgaaggtgggcgaaggcacgatcgtcgacgaatccggcctggtcaac
ccgatggggtccaatgcgggcagcggcgtcgacacgacggacggcaccatcacctacacc
gcgccggacggcccggcgaccgtgacgatcaacgggcagccggtcatcatcggaacgacc
atcgccaccgacaagggcatattgacgatcaccggccttaacgaaggccagatcgattat
acctatgaactgacgaccaacacgaccggcgacgacgtgacggacagcttcgtcgtcacc
gtcaccgacgtggacggcgacacggcgaccgatacgctgaccatcaccatcctggacgac
gtgccgaccgcgacgaacgacacggactcggtgcgcgaggacggcccgctggtggccgac
ggcaacgtcatcaccggttcgggcggcagcgacgccaacggcaccgacggcaatgccgac
gtgcagggcgccgacggcgcgcaggtcagcgccatcgccttcggcgggacggccggaacg
gtcggcgcgccgctggccggactgtacggatcgctcgtgatccaggcgaacggcagctac
gcctatacgctggataatgaaaatggcgtggtccagggcctggacaagaccgagaccctg
accgagaccttcacctacacgctgaccgacggcgacggcgatgcgcgcaccgcgaccatc
accatcaccatccagggcagcgacgatggcgtcaccatcaacggcctggacggcgaaggg
gcggaggaaaccgtcttcgaaaacgacctgccggggggtagttcggaaaatgtggcggcg
ctgacccagacgggcggcttcaccctgtccgcgccggacggcgtggcgaccgtcactgtc
ggcggccagccgatcttcggcgcgggcggcttcatcggcggcgtcaccatcgccaacgcc
tatggcacgctcagcatcaccggcttcacgccgacgctgggcgcggacggcgacgtgatc
ggcgggaccgtcagctacagctatgtcctcactgacaacacgctgctgcacagcggcgtc
aatgacggcagcctgacggacagtttcgcggtcgtcgtcaccgacacggacgggtccacc
gacagcgccagcctggacatccgcgtggtcgacgacgtgccgacggcggtgaacgacgtc
gcgggccagctcaccgaaaatgcggcggtgacgatcgacgtcttcgccaatgacgtggcc
ggggcggacggcgtcaacctcgccagcggcgtggcgctggagagcggcgcagccaagggc
acggtcgtctatcagggcaatggcgtcttcctctacacccccaatgcgggcgcggagggc
agcgacagcttcacctacacgatcaccgacggcgacggcgacaagtccaccgccacggtg
acgatcaacctgctccaggattcgacgccgaccgtcagcgtcaccgacatgaccgtgtcc
gaagcgggcctgcccggcggcacgcagcaggccgggaacagcgagaccgcgaccggctcc
atgaccatcgcgaccggcggcgacacgctgaccaaggtcgaggtgcaggacaagaacggc
gcctgggtcgacgtcaccggcgcgacggcgagcacgccggtggtcgtcgcgggcgcggcg
ggcgcgctgaccgtgacctcggacggggcggggcattacagctacagctacaccctggcg
gtcaacgacccggcccatcccgacaatgtcaccagcgacggcgacggcatcagcggcgcg
gccgaccccaaggcgggcgacgccttcgcggtgcgcgtgaccgacagcgacggcgacgtc
tctccggccgatacgatcaacgtgaccgtgctggacgacgcgcccatcgcgacggccgac
agcggttcggtgagcgagggcggctcgctgatcgtcgcggcggccgacggcgtgctcgac
aatgaccagccgggcgcggacggctatgcgccgggcgtggtcggcgtggccaagggcagc
gatccgtccagccccgtcagcggccaggtcggcacggcggtcgcgggcgattacggcacg
ctgacgctcttcgccgacggcagctatcgctatgacgcgacgcccaacgccatttcggcc
gatcagcaggacgtgttcgtctataccatccgcgacgcggacggcgacctggcgacaacg
acgctgaccatcgacgtcgccaatgtcgcgctcgccccggacaatcagaccaagaccgtc
ttcgaagccgcgctggacaccggcatcaccggatcggacatcgcggcgggcagcgtcacc
ggcagcgcgccgggccagcccaccgaaaccgcgaccggccagctcaacgtcgcgggcgcg
gtcagctacacgctgaccagttccgccaccggcagccacggccagcttcagttgaacgcc
aatggcagctacacctacacgctgacctcgccggtggacggcccgacggcgaatgacggt
ccgttgaccttcgcgggcgcggaggtcttcacttatcaggcggtcgacggctccggcaat
atcgccaacggcacgatcaccatcgacgtggtggacgatgttccgacggccgtgaacgat
gctctcctgaccgtggcggaggatggcgccgacatcggcggcaacgtcctgaccaacgac
acgcccggcgcggacggcgcgaccctgacctccgtcaccatcggcggcgtcaccacggcg
atcaacgccgtgggcacgaccaacgtcagcggggccttcggcgcctataccttcacggcg
gcgggcgcgtggaccttcaacccgtcgaccaacctcaacaatgccagcggcgtcagcgcg
ggcttctcctacgtcatcaccgacggcgacggggaccagtcgaccgccgtgcagccgatc
acggtcacggacggggctaaccccatcgcgggcgcgccgatcagcctggcgctggacgat
cagaatctggcgggcggcacgacgcagggcaatcccgacttcgtgcaggataacgtcagc
ttcacggccggatcggacgcgctgaccggcttcgccttcgccacggacctgtccgccctg
ggcggcgggctgacctggaaccgcgtcagcgccacgctgatcgagggctgggacggcccg
gtcggcacgggcgtcaagatcgtcgcgctgacgctgacggcgcccgcctccatcggcgcg
ggcctcagcggcaatgtgcaggtgacggcgacgctgctcgacaattatgacagccatccg
aacatcgccctggacgacagcgtctccctgggcagcgtcggcgtcgtcgcgtccgatcag
gacggcgacagcgccaccgcgacggtcaacctgtccgtttcggacgacgtgccgcaagcg
gtcaatgacggccagttggccatcgtcgatgacaatgccagcggcgtggtcgtcggcacg
gttgccgggctgctcggcaatgacgtcttcggcgcggacggccccggctcgcccgccatc
gcgatcggcaccggcaatctgggcggcaccatctccatagtcggcggcaatctggtctac
acgtcgcaccacaatatcgcggcgccttacgcctccatcggcgagacgttcacctacacc
atcaaggatggcgacggggacacctcctcggcgaccttctcggtcctgctgaccgatacg
ggaccgtcgatcagcgcggcggctgcggccttcacggtcgatgaggacggtcttgccaac
ggcgtgacccagccggtgacgggtgacgtggacggcgcggacatcgtcaagacagggacg
ctggcagggctcaacttcggcaatgacggcgccggcaatatcgtgctgggcgcggtggcc
gacacgggcctgcggaccctgtccaaccatgtgatccagacgatatgggacggcacaagc
cacacgctgactggaaaggatgcggtgacgggggataatatcttcacgttgcagatcacc
gacgtggccagcggcgcctatcgcttcgaactgctcgcgccggtcaagcacagcgatccg
gcgagcgaggacgacaagtccttcaccgtcgcggtaaccgtgacggatgccgaaaatgaa
agcgccagcgggacgatcagcgtcaccatcgacgatgacagcccggcggttacggcgaca
ctgccggctgcgggttcgctggtcgtcgatgaaagcaatctggcgtttgacgccacggcc
agcttcgcaggcaacttcactgcgctctacggggccgacggcaaggggtcgctcagctat
tcgctgggggtcagcgcgcagggcgcggccaccaacctcttcgataccgccaccggcaat
cgcgtctatctgttcgtggaatcgggcaaggtcgtgggccgcgaaggcaccagttcgggc
aatgcggccggggggccggtcgtgttccaactgacggtcgacgcgctgggcgcggtgacg
ctggatcagcagcgcgccgttctccacacgcccgataccggacccaatcaggctatcgga
cttgatgtgggcagcctcatcaccctcacggcgaccgccgtggacggcgacgccgatacg
gtgagccagcagatcaatttcggccagaccatcagcttcctggacgatgtcggcacgctt
ggcgccttcagcaacatcaccgtcgtcaacggcgccaatgtcgtgggcaacggcacgttc
agttataatgcaggcgccgacgggcatggcagcttcgccatcaccggcccggtgctgccc
ggcatcagctacaccaccacgcagaacgctacgggcgcgctgctgacggccacgaccgat
cccgacggcccggggggcaatccgcctgtcaccgtcttcacccttcaggtgaatgcgaac
ggcacgtcggtcttcacgctggtgacgccgcaggcagcgaccagcgagacgatctcgctg
ctgggcctcagcgccggcggtccgacccccttcgtccagacggcggacggccgggtcgaa
ttcaccggcaacggcaatggcgtgaactcgtccacccagggcttcggcgtcgacaatcaa
tttgtcggcaacggagaaaatttcaccatcgaattccacaatccgggacaggcgggcgat
caggccgcaactgtcaatccggatatggtgagctccatcatcctcaagaacgacaacatc
aacggatcgctgggcatcaaggtcaccgtctataatgacgtgaccggtcagtcggaggtg
gtctacaccaatttcaacgtcaccggcacgtccaccctgatcgatcccgtgatgtcggaa
ttcaaccgcgtttcgatcgagggcgtgggcggcagcggccagggcgtccgcttcaccagc
ctggtgatcaacaagacgatcctgccctccgacatcgacctgcatttcactgtgcaggcg
acggacaaggatggcgacgtcacctccacatcgacgctcaacgtcttcgtcgacgcgacc
agcccgacgccgccggtggcgatcgacctgaacggcgacggcctgcatttcgtgggcctg
gatgccggcgtcacccatgattatggcaacggcgcggtggcgacggcgtgggtgtcgtcc
gaagacggactacttggccatgtcacgggcaagggcatcgacatcgtctttaccgacgat
gctccgggtgcgcagaccgacctggaaggcctccgcctcgcctatgacagcaatggcgac
ggcaagctggatacggccgacactgccttcgccgaattcggggtctggcaggacgcgaac
ggcaatggcgcggtcgatcagggcgaattcaagtcgctgaccgatctcggcatcgcatcg
atcgacctgaattccgacggcaagacgtacagtgccgccaatggcgacgtcaccgtgctg
ggcgaagcgagcttcacccgcaccgacggcaccaagggcacggtcggcgacgttatcttc
gccaccggcagcagcgatgcgagcaagaccacggaaagcaccgccagcggcttcaaccag
gcgctggtcgcggccagcctggtcgccgtggcgggcgcggccgaggctccggccgagcag
cagcccgcgccgaccgcgaccgaaagcgccgcgccggtcacggaaaccgccccggccgtc
acggtcgaggccgagcctgccgccacgcaggaaagcgcgcccaccacgctcgccgcgaac
gacgatcaggcgacccatgagcagcctgcgccgaccggccacgctgctgaagaggccgcg
cccgaccatgccaccctgtccgatggcgatgcgcatgtctcgaccgtcgaaacggccgac
gcgcctcagcccgacctcagcggtcatcagggtctgctggcccagtccatcgacctgccg
cctgccttcgacggcaatgcggcggcggtcctggctgcgcagcaggccgctccggcagcc
aatgccgccgatgtcgtgaaggaagcgctgggggcccatgacgcgccgaacatcgacgcg
ctgctggccgccctgccgggtggcgagcatgcctcgacgcccatcctgctgaacccggtc
gcgggcgaggcggtggacagcgggcatctggcggcggccacggccatcttcgaagcggcg
atggtcgcgcatgaagcgatggcggtcgcccatggctga

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Ontology (1)   
   KEGG BRITE (1)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (59)   
   KEGG ORTHOLOGY (1)   
   RefGene (55)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (67)   

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