KEGG   Sanguibacter keddieii: Sked_29830
Entry
Sked_29830        CDS       T01214                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
ske  Sanguibacter keddieii
Pathway
ske03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ske00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Sked_29830
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ske03021]
    Sked_29830
   03400 DNA repair and recombination proteins [BR:ske03400]
    Sked_29830
Enzymes [BR:ske01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Sked_29830
Transcription machinery [BR:ske03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Sked_29830
DNA repair and recombination proteins [BR:ske03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Sked_29830
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: ACZ22885
UniProt: D1BC98
Position
complement(3312060..3315572)
AA seq 1170 aa
MAASRTPSAPSADAIANRTASRRVSFAKIFEPLEVPDLLGLQTDSFDWLLGNEKWRARVA
AAMKLGTQDVPETSGLEEIFEEISPIEDFGSSMSLSFSNHRFEPPKHTAEECKEKDFTYA
APLFVTAEFFNYNTGEIKSQTVFMGDFPLMTERGTFIINGTERVVVSQLVRSPGVYFERA
ADKTSDKDIFSAKIIPQRGAWLEFEIDKRDAVGVRVDRKRKQSVTVLLKALGLTESEIRE
EFAAFPAILDTLEKDNVTTEEEALVDLYRKIRPGEPPTVEAGRSLLENFYFNSKRYDLAK
VGRYKVNKKLGIDAPLADSVLTVTDIVKTIKYLAALHADVTALDGVKNGEAVEVRVETDD
IDHFGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDVEAIAPQTLINIRPVVASIKE
FFGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETP
EGPNIGLIGSLASFGRINPFGFIETPYRKVENGKVSDDVVYLTADDEDRYVIAQANTELN
EDGSFRQERVLVRTKGGETDDVLGSNVDYMDVSPRQMVSVATALIPFLEHDDANRALMGA
NMQRQAVPLVRSEAPFVGTGMERRAAIDAGDVIVATKPGVVTEVSADLIVVANDDATTTS
YRAAKFRRSNQGTSYNQRVLVDEGARVEVGSVLADGPATDEGELALGRNLLVAFMSWEGH
NYEDAIILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEDVLADLDERGI
IRIGAEVSSGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGTVIE
VRTFNREDGDELPAGVNELVRVYIAQRRKITAGDKLAGRHGNKGVISTILPVEDMPFLED
GTPVDIVLNPMGVPGRMNVGQVLEVHLGWIAAQGWDVDLATEGDLSWKENVPAVASTSKP
RNPVATPVFDGLQENALSGLLQSTLPNRDGARMVQPDGKARLFDGRSGEPFPEAVAVGYM
YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEL
LTIKSDDVPGRVKVYEAIVKGENIPDSGIPESFKVLLKEMQSLCLNVEVLSSDGVSIEMR
ESDDDVYRAAEELGIDLSRRPNAAASIDEI
NT seq 3513 nt   +upstreamnt  +downstreamnt
ttggctgcctcgcgcaccccttctgctccgtccgccgacgcaatcgcgaaccgcaccgca
tctcggcgcgtctccttcgccaagatttttgagccgctcgaggtccccgacctcctcggc
ctccagaccgacagcttcgactggctcctgggcaacgagaagtggcgcgcgcgtgtcgcg
gcagccatgaagctcggcacccaggacgtgccggagacctccgggctggaagagatcttc
gaagagatctccccgatcgaggacttcggctcctcgatgtcactctcgttctccaaccac
cgcttcgagcccccgaagcacacggcggaggagtgcaaggagaaggacttcacctacgcg
gcgcctctgttcgtcaccgcggagttcttcaactacaacaccggcgagatcaagagccag
acggtcttcatgggtgacttccccctgatgaccgagcgcggcaccttcatcatcaacggc
accgagcgcgtcgtcgtctcgcagctcgtccgttcgcccggcgtgtacttcgagcgcgcg
gccgacaagaccagcgacaaggacatcttctccgcgaagatcatcccgcagcgtggtgcc
tggctcgagttcgagatcgacaagcgcgacgccgtcggcgtccgcgtcgaccgcaagcgc
aagcagtcggtcaccgtcctcctcaaggccctcggcctcacggagtcggagatccgcgag
gagttcgcggccttccccgcgatcctcgacaccctcgagaaggacaacgtcacgaccgag
gaagaggcgctcgtcgacctctaccgcaagatccgtccgggcgagccgcccacggtcgag
gccggtcgctcgctcctcgagaacttctacttcaactccaagcgctacgacctcgcgaag
gtcggccgctacaaggtgaacaagaagctcggcatcgacgcgccgctcgccgactcggtc
ctgaccgtcaccgacatcgtcaagacgatcaagtacctcgcggccctgcacgccgacgtc
accgcgctcgacggcgtcaagaacggcgaggccgtcgaggtgcgcgtcgagaccgacgac
atcgaccacttcggcaaccgtcgtatccgcgccgtgggcgagctcatccagaaccaggtc
cgcaccggcctgtcgcggatggagcgcgtcgtgcgcgagcgcatgacgacccaggacgtc
gaggccatcgccccgcagaccctgatcaacatccgccccgtcgtggcgtcgatcaaggag
ttcttcgggacgtcccagctgtcgcagttcatggaccagaacaacccgctcgccggcctg
acgcacaagcgtcgtctgtccgcgctgggcccgggtggtctgtcccgcgaccgcgccggc
atggaggtccgtgacgtccacccgtcgcactacggccgcatgtgcccgatcgagacccct
gagggcccgaacatcggcctcatcggctcgctcgcgtccttcggtcgcatcaaccccttc
ggcttcatcgagacgccgtaccgcaaggtcgagaacggcaaggtctccgacgacgtcgtg
tacctcacggccgacgacgaggaccgctacgtcatcgcccaggcgaacacggagctcaac
gaggacggctcgttccgccaggagcgcgtcctggtccgcaccaagggtggcgagacggac
gacgtcctcggctccaacgtggactacatggacgtctccccgcgccagatggtgtcggtc
gcgaccgccctcatcccgttcctcgagcacgacgacgccaaccgcgcgctcatgggcgcc
aacatgcagcgccaggccgtgccgctggtccgctcggaggctcccttcgtcgggaccggc
atggagcgtcgtgccgcgatcgacgccggtgacgtcatcgtcgccaccaagcccggtgtg
gtcaccgaggtctccgcagacctcatcgtcgtcgccaacgacgacgcgaccaccacgagc
taccgcgccgcgaagttccgccgctcgaaccaggggacctcctacaaccagcgcgtgctg
gtcgacgagggtgcccgcgtcgaggtcggctcggtcctcgccgacggccccgcgacggac
gagggcgagctcgcgctcggccgcaacctgctcgtcgcgttcatgtcgtgggaaggccac
aactacgaggacgcgatcatcctcagccagcgtctggtccaggacgacgtcctctcctcg
atccacatcgaggagcacgaggtcgacgcccgcgacacgaagctcggcccggaggagatc
acccgggacatcccgaacgtctccgaggacgtcctggccgacctcgacgagcgcggcatc
atccgcatcggcgccgaggtcagctcgggcgacgtgctcgtcggcaaggtcacgcccaag
ggcgagaccgagctcaccccggaggagcgcctgctgcgcgccatcttcggcgagaaggcc
cgcgaggtccgcgacacgtccctcaaggtgccccacggcgagtccggcacggtcatcgag
gtccgcacgttcaaccgtgaggacggcgacgagctgcccgccggtgtcaacgagctggtc
cgcgtgtacatcgcccagcgacgcaagatcaccgcgggcgacaagctcgccggccgtcac
gggaacaagggcgtcatctcgacgatcctcccggtcgaggacatgccgttcctcgaggac
ggcacgcccgtcgacatcgtcctcaaccccatgggtgtcccgggacgaatgaacgtcggt
caggtgctcgaggtccacctcgggtggatcgcggcgcagggctgggacgtcgacctcgcg
acggagggcgacctctcctggaaggagaacgtccccgcggtcgcgtcgacgtcgaagccc
cgcaacccggtcgccacgcccgtgttcgacggtctccaggagaacgccctctcgggtctg
ctccagagcaccctcccgaaccgcgacggcgcacgcatggtgcagcccgacggcaaggca
cgcctcttcgacggccgctccggcgagccgttccccgaggccgtggccgtcggctacatg
tacatcttgaagctccaccacctggtggacgacaagatccacgcgcgctcgaccggtccg
tactcgatgatcacccagcagccgctcggcggtaaggcccagttcggtggccagcgcttc
ggtgagatggaggtctgggccctcgaggcgtacggagccgcgtacaccctgcaggagctc
ctcaccatcaagtcggacgacgtcccgggccgtgtcaaggtctacgaggcgatcgtcaag
ggcgagaacatccccgactcgggcatcccggagtccttcaaggtcctcctcaaggagatg
cagtcgctgtgcctgaacgtcgaggtgctctcgagcgacggtgtctccatcgagatgcgc
gagtccgacgacgacgtgtaccgcgccgctgaagagctcggtatcgacctgtcgcgtcgc
ccgaacgcagcagcgagcatcgacgagatctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (22)   

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