KEGG   Saccoglossus kowalevskii (acorn worm): 100374985
Entry
100374985         CDS       T04123                                 
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen2-like
  KO
K15322  tRNA-splicing endonuclease subunit Sen2 [EC:4.6.1.16]
Organism
sko  Saccoglossus kowalevskii (acorn worm)
Brite
KEGG Orthology (KO) [BR:sko00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sko03016]
    100374985
Enzymes [BR:sko01000]
 4. Lyases
  4.6  Phosphorus-oxygen lyases
   4.6.1  Phosphorus-oxygen lyases (only sub-subclass identified to date)
    4.6.1.16  tRNA-intron lyase
     100374985
Transfer RNA biogenesis [BR:sko03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing endonuclease complex
    100374985
SSDB
Motif
Pfam: tRNA_int_endo tRNA_int_endo_N
Other DBs
NCBI-GeneID: 100374985
NCBI-ProteinID: XP_002736770
Position
Un
AA seq 597 aa
MAALNKLTKPRRKKRIHQPESSPFPVPIESIDGKPASDDHWYYYTGNLVDNCVLVTNPGD
IAFIYKMGFFGKGMFSRSKPEHKRFISSYQGTVRKNLPPNERRFQQQRFQQVRKRRYMRH
LEWYKEYKEHFPLDFRGENDTDPTQSTSFEPKYMCSDENDGPTAKKMKLFDISTGNDDDD
GATQTDDVTVKTDAARTCSSVFNNDVTTGYDDDTAGYNNVTPRNDDVTARIDDVTVGNDD
VTTMEDIVTTSDKTVNKLDDVPTESKNISFRDDKIEKSEFIEHDKIECAERELMEDKTSN
HLHKHDDIPCNAKNKCSDNDDVILCTQCDDVTKDDYKMESSDERTECTQLCDVRNESARI
DSTQMSMESSDIVESSDEADEEEMPQTTIPSTVKDDSHGNIKHKNRKSIKKDDPYQVFEY
LQLSLEEAFFLSYGLGCLTVLDKDKNSLNLSDMWLRYCAINPRFISSYAVYHYIRSKGWV
PKTGIKFGSDYIVYKQGPPFYHSTYSVLISMVDEDTLLSCEDEQRPLTWPVICGMSRVTE
HAAKEIMFCHVIKPSDMTAEEMKSPRCLERLKVQETVMRRWVSAKERMDKGSYSVIS
NT seq 1794 nt   +upstreamnt  +downstreamnt
atggcagcattaaataagttaacaaaaccgaggagaaaaaaacgaatacaccaaccagaa
tccagtccatttcctgtccctatagaatcaattgatggtaagccagctagcgatgaccat
tggtattactatacagggaacttggttgataactgtgtgttagttaccaatcctggtgat
atcgcatttatttataaaatgggtttctttgggaaaggaatgttctcgcgtagtaagccg
gaacataaaagatttatttcttcttatcaaggaactgtcaggaaaaacttgcctccaaat
gagagaagatttcaacaacaaaggtttcaacaggtcagaaaacgaaggtatatgagacat
ctggagtggtataaagagtataaagaacattttccccttgatttccgtggtgagaatgat
acagatcctacccaatcaacaagttttgagcccaagtacatgtgcagtgatgaaaatgat
ggaccaactgcaaaaaagatgaaactatttgacatcagcacaggaaatgatgatgatgat
ggtgcgacacaaactgatgatgtcacagtaaaaactgatgcagcgaggacatgctcttct
gtttttaataatgatgtcacaactgggtatgatgatgacactgcaggatacaataatgtc
actccaagaaatgatgatgtcactgcaagaattgatgatgtcactgtaggaaatgatgat
gtcactactatggaagatattgtcactacaagtgacaaaacagttaataaactagatgat
gttccaacagaaagtaaaaatattagttttagggatgacaaaatagaaaaatcagaattt
attgaacatgacaaaatagaatgtgcagaaagagaattaatggaagataaaacaagcaac
catttacataaacacgatgacattccctgtaatgcaaaaaataaatgctcagataatgat
gatgtcattttgtgcacacaatgtgatgatgtcaccaaggatgactataaaatggagagt
tcagatgaacgcacagaatgcactcaattgtgtgatgtcagaaatgaatctgctagaatt
gatagtacgcagatgagcatggaaagcagtgatattgtggagtcgtctgatgaagctgat
gaagaagagatgccacaaacaacaattccatcaacagtgaaagatgacagccatggaaat
ataaagcataaaaatagaaaatcgataaaaaaagatgatccgtatcaagtttttgagtat
ttacaacttagtctagaagaggctttcttcttgtcctatgggttaggctgtctgacggtt
ctggataaagacaagaattctttaaatctaagtgatatgtggttgagatattgtgcaatt
aatccgcgattcatttcttcctatgctgtgtatcattacatacgaagcaaaggttgggtt
ccaaaaacgggcattaaatttggttctgattacattgtttacaaacaaggacctccattc
taccactccacctactctgtgttaatatcaatggttgacgaagacaccctcctctcctgt
gaagatgaacagcgccctctaacctggccagttatctgtggaatgagcagggtcacggag
catgctgctaaggagattatgttctgtcatgtcatcaagccatctgatatgacggctgag
gaaatgaagtcaccaagatgtctggagagactcaaagttcaagaaactgtgatgagacgc
tgggtatctgccaaagagcgtatggataagggttcctattctgtgatttcataa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (60)   
   KEGG ORTHOLOGY (1)   
   RefGene (56)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (69)   

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