KEGG   Saccoglossus kowalevskii (acorn worm): 100377188
Entry
100377188         CDS       T04123                                 
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
sko  Saccoglossus kowalevskii (acorn worm)
Brite
KEGG Orthology (KO) [BR:sko00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sko03016]
    100377188
Enzymes [BR:sko01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     100377188
Transfer RNA biogenesis [BR:sko03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    100377188
 Prokaryotic type
   tRNA splicing ligases
    100377188
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-GeneID: 100377188
NCBI-ProteinID: XP_002737089
Position
Un
AA seq 457 aa
MTTIRTYQEELKFIEKIDKNCWKIKKGFVPNMQVEGCFYVNDVLERLMFDELRNACRNPG
MGGFLPGMKQIANVAALPGIVHKSVGLPDVHSGYGFAIGNMAAFDMSNPDSVVSPGGVGF
DINCGVRLLRTNLCEKDVQPVKEQLAQSMFDHIPVGVGSKGVIPMTARDLEEALEMGMDW
SLREGYAWAEDKEHCEEFGRMLQADPNKVSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIY
DSHASKKMGIDFVGQVCVMIHSGSRGLGHQVATDALVQMEKAMKRDKIEVNDRQLACAKI
TSQEGQDYLKGMAGAANYAFVNRTSMCFLTRQAVAKVFNTTPDDLDMHMIYDVSHNIAKI
EQHIIDGKEKTLLVHRKGSTRAFPPHHPLIPVDYQMTGQPVLIGGTMGTCSYVLTGTDEG
MSRTFGTTCHGAGRAWSRAKSRRNLDYHDVLSKLADQ
NT seq 1371 nt   +upstreamnt  +downstreamnt
atgactaccataagaacatatcaagaagaacttaaatttattgagaaaattgataagaac
tgttggaaaataaagaaagggtttgtccctaatatgcaggttgaaggttgtttttatgtg
aatgatgtccttgaacggttaatgtttgatgagctgagaaatgcttgcagaaatcctgga
atgggtggatttttacctggcatgaaacagattgctaatgtagcagcattacctggtatt
gtacacaaatctgttggtctccctgatgtacactctgggtatgggtttgcaattggcaat
atggctgcctttgatatgagtaacccagattcagtggtatcaccgggtggggttggattt
gatatcaactgtggtgtgagacttctgagaactaatctttgtgagaaagatgtgcaacca
gtgaaagaacaacttgcacagtctatgtttgatcacataccagtaggagttggatctaaa
ggtgttataccaatgactgcaagagatcttgaagaagccttggaaatgggcatggactgg
tcactaagagaaggctatgcctgggctgaagataaggaacattgtgaagaatttggtcgt
atgctacaagctgacccaaataaagtcagtcctagagctaaaaaaaggggtttacctcag
ctgggtacacttggtgctggtaatcattatgctgagatacaagtagtggatgagatctat
gattcacatgccagtaaaaagatgggtattgactttgtaggacaagtatgtgttatgata
cacagtggtagtcggggattaggtcatcaagttgcaacagatgctcttgtacaaatggag
aaagccatgaagagagataagatagaagtaaatgatcgtcagttggcttgtgctaaaata
acatctcaagaaggtcaagattatctcaaaggaatggctggtgctgctaactatgcattt
gttaataggactagtatgtgttttctgacacggcaggcagtagccaaagtattcaatacc
acaccagatgatcttgatatgcatatgatctatgatgtgtctcataatatagcaaagatt
gaacaacatatcattgatggtaaagagaagacattattggtccatcgtaagggatctaca
agagcatttcctcctcaccatcctctcataccagtagactatcagatgactggtcagcca
gtgttgattggtggtactatgggtacatgtagttatgtattgactggaactgatgaaggc
atgtcccggacgtttggtacaacgtgtcatggcgctgggagggcatggtccagagctaaa
tctcggcgaaatcttgactaccatgatgtgctatctaaactggcagatcaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

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