KEGG   Sphingomonas koreensis: BRX40_04690
Entry
BRX40_04690       CDS       T04828                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
skr  Sphingomonas koreensis
Brite
KEGG Orthology (KO) [BR:skr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:skr03032]
    BRX40_04690
   03400 DNA repair and recombination proteins [BR:skr03400]
    BRX40_04690
Enzymes [BR:skr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     BRX40_04690
DNA replication proteins [BR:skr03032]
 Prokaryotic type
  DNA Topoisomerases
   BRX40_04690
DNA repair and recombination proteins [BR:skr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BRX40_04690
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim zf-C4_Topoisom Toprim_4
Other DBs
NCBI-ProteinID: APR51822
UniProt: A0A1L6J789
Position
933019..935568
AA seq 849 aa
MQLVIVESPAKAKTIEKYLGKDYRVLASYGHVRDLPPKDGSVKPDEGFAMDWETYADKAK
QLKAITDEAKKADRLILATDPDREGEAISWHVQELLAKKKALPKEVERVTFNAITKPAIL
AAMAAPRQLDTDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLIVERE
REIELFKAQEYWSVTAHLEHDGTAFDARLVRFEGKKLDRLSIGDEGTANRAKAAVEQGRF
TVASVETKPAMRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQGLYEDGAITYMRTDGVQ
MDGSAIDAARKAIVGRYQASYIPDKPRQYQTKAKNAQEAHEAIRPTDFSRDKAGSGDHAK
LYDLIWKRALASQMASARLERTTVELEEPTGQDALRATGQVVLFPGYLALYEEGRDDEGD
EDSRRLPVIRNGDTPAKKGVDAEQHFTQPPPRFSEASLVKRMEELGIGRPSTYASIIQVL
KDRAYVRVEKNRFFAEETGRLLTAFLERFFEKYVNYDFTAGLEEELDDVSGGRAGWQAVL
EAFWKDFRPRTDEVMERKPSEVTEALDKFLEPYLFPDKGDGSDPRLCPACGEGRLALRGG
KFGAFVACSNYPECKFTRRFGQPGGAEGGDTGPEVIGQDPVTGEDISRRSGRFGPYIQRG
EGKEAARASIPKDIPEFDLDWAVKLLNLPRTIGDHPESGKPITASIGRYGPYLAHDGKYA
RLSSTMDVFETGMNAAVVKLAEAAAGGGRARGASREPLKVFGAHPESGAEIKLMEGRFGP
YLTDGTTNATLPKSVDQATLTLEEAVQLIDAKAAAGPAKKKGRKAPAKKAAAKKAPAKKA
PGKKAAAKA
NT seq 2550 nt   +upstreamnt  +downstreamnt
atgcagctggtcatcgtcgaatcgcccgccaaggcgaaaaccatcgagaaatatctgggc
aaggactatcgcgtcctcgcttcctacggccatgtccgcgacttgccgcccaaggatgga
tcggtgaagcccgacgagggcttcgcgatggactgggagacctatgccgacaaggccaag
cagctgaaagcgatcaccgatgaggcgaagaaggccgaccgcctgatcctcgccaccgac
cccgatcgcgagggggaggccatttcgtggcacgtgcaggagctgctggcgaagaagaag
gcgctgcccaaggaagtcgagcgcgtcactttcaacgcgatcaccaagcccgcgattctc
gcggcgatggccgcgccgcgccagctcgataccgatctgatcgacgcctatcgcgcccgc
cgcgcgctcgactatctggtcggattcaccctgtcgccggtgctgtggcgcaagctgccg
ggtgccaagtcggcaggccgggtccagtcggtcgcgctgcgcctgatcgtcgagcgcgag
cgcgagatcgagctgttcaaggcccaggaatattggagcgtcaccgcgcatctcgagcat
gacggcaccgcgttcgacgcgcggctggtgcggttcgagggcaagaagctcgaccggctt
tcgatcggcgatgaggggacggccaaccgcgccaaggccgcggtcgagcaggggcgcttc
accgtcgcctcggtcgagaccaagccggcgatgcgcaacccgccgccgcccttcacgacg
tccacgctccagcaggaggctgcgcgcaagctcggcttctcggcgagccacacgatgcgg
atcgcgcaggggctctatgaggacggtgcgatcacctatatgcggaccgacggcgtgcag
atggacggcagcgccatcgacgctgcgcgcaaggcgatcgtgggccgctatcaggcgagc
tacatcccggacaagccgcgacagtaccagaccaaggccaagaacgcacaggaagcacac
gaggcgatccgcccgaccgatttcagccgcgacaaggcgggatcgggcgatcatgccaag
ctctacgacctgatctggaagcgcgcgctggcgagccagatggcgtcggcacggcttgag
cgcaccacggtcgagctggaagagccgaccggtcaggacgctctgcgcgcgaccggccag
gtggtgctcttccccggctatctcgcgctctacgaagagggccgcgacgacgagggcgac
gaggattcgcgccgcctgccggtgatccgcaacggcgacacgccggccaagaagggcgtc
gatgccgaacagcatttcacccagccgccgccgcgcttctccgaagcctcgctggtcaag
cggatggaggaactcggcatcggccgcccctcgacctatgcctcgatcatccaggtgctc
aaggatcgcgcctatgtccgggtcgagaagaaccgcttcttcgccgaagagaccggccgc
ctcctgaccgcattcctcgagcggtttttcgagaagtacgtcaattacgacttcactgcc
gggctcgaggaagaactggacgatgtgtcgggcggccgcgccggctggcaggcggtgctc
gaggcgttctggaaggatttccgcccgcgcaccgacgaggtgatggagcgcaagccgagc
gaagtgaccgaggcgctcgacaagttcctcgaaccctatctcttccccgacaagggcgat
ggcagcgatccgcgcctctgcccggcgtgcggtgaggggcgccttgcgctgcgcggcggc
aagttcggcgcgttcgtcgcctgctccaactatcccgagtgcaagttcacccgccgcttc
ggccagccgggcggcgccgagggtggcgataccgggccggaggtgatcggtcaggatccg
gtgacgggcgaggacatctcgcgccgctcgggccggttcgggccgtacatccagcgcggc
gagggcaaggaagcggcacgcgcctccatccccaaggacattccggagttcgatctcgac
tgggcggtgaagctgctcaacctgccccgcacgatcggggatcaccccgaaagcggcaag
ccgatcactgcctcgatcggccgctatggcccctatctggcgcatgacggcaagtacgcg
cggctgtcctcgacgatggacgtgttcgagacgggcatgaacgccgcggtggtcaagctg
gccgaggcggcggcaggcggcgggcgtgcgcgcggcgcgagccgcgagccgctcaaggtc
tttggcgcccatccggaatcgggcgcggagatcaagctgatggaaggccgcttcggccca
tacctcaccgacggcacgaccaacgcgacgctgcccaagtctgtcgatcaggcaacgctg
acgctcgaggaggcggtgcagctgatcgacgccaaggcagcggcgggcccggccaagaag
aagggtcgaaaggctccggccaaaaaggccgccgcgaagaaagcgcccgcgaagaaggcc
cctggcaagaaggcggcagcaaaggcatga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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