KEGG   Salinivibrio kushneri: FCN78_02765
Entry
FCN78_02765       CDS       T05956                                 
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
sks  Salinivibrio kushneri
Brite
KEGG Orthology (KO) [BR:sks00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sks03009]
    FCN78_02765 (rlmD)
Enzymes [BR:sks01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     FCN78_02765 (rlmD)
Ribosome biogenesis [BR:sks03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    FCN78_02765 (rlmD)
SSDB
Motif
Pfam: tRNA_U5-meth_tr TRAM Methyltransf_31 Methyltransf_25 PCMT MTS Methyltransf_23 Methyltransf_11 RrnaAD Met_10 Methyltransf_32 Methyltransf_15 Methyltr_RsmB-F Methyltransf_4 DREV Cons_hypoth95 PrmA CMAS DOT1 Gag_p24
Other DBs
NCBI-ProteinID: QCP01418
Position
1:568558..569883
AA seq 441 aa
MARFFKPEKKKKVEQKHQLLTIKRLDHHGDGVGFWQKKPVFVPGTLPGEQALVQLTEQKR
QYARGQLIKLDSHAAQRVEPGCPLYQQCGGCSLQHLSHQGQVAHKQQALNELMQKFAGDE
ITLSTPIEDAPWHYRRRARISLQVDKKGALAMGFRARQRSAIIDVSHCPVLSEPLNHILA
GLRACLDSLRGRRILGHLDLIEADNTRVVSLRTTKVLHSDDRHTLMEWAQAQDCTLYLHQ
GDRDAERLTGPAPYYQVAGCQLAFAPSDFIQVNARVNQQMVAQAREWLALEQDDRVLDLF
CGLGNFSVPMAQHVNQVVGVEGVQAMVNQAADNAAANQCDNASFYQADLNSDQLMGEWVQ
QDFTKILLDPARAGAAGVIDFVAQSNASHIVYVSCNPATLARDARVLLDNGYQLVKLGML
DMFPQTGHMESMALFMPVKKK
NT seq 1326 nt   +upstreamnt  +downstreamnt
atggcgcgcttttttaagcccgagaaaaagaaaaaggttgagcaaaagcatcaactactg
acgataaaacgcctggatcatcatggtgacggcgtcggtttttggcagaaaaagcctgtt
tttgtcccaggcaccttgcccggcgagcaagccctggtgcaattgaccgagcaaaagcgc
caatatgcgcgcggtcagcttattaagttggatagccatgcggcgcagcgcgtggagcct
ggttgcccgctctatcagcaatgtggcggttgcagcctgcagcacttgagtcatcaaggg
caggtggcgcacaagcagcaagcgctgaatgaattaatgcaaaaatttgccggtgatgag
atcacgctgtcaacgccgatagaggatgcgccgtggcattatcgccgtcgtgcgcgtatc
agcttacaagttgataaaaaaggcgcattggcaatgggctttcgtgcgcgtcagcgcagc
gccattatcgatgtcagtcattgcccggtgttaagcgagccattaaatcacatcttggct
ggattacgcgcctgtttagatagcttgcgtggtcgccgaattttaggccatttggatctt
atcgaagccgataatacgcgtgtggtgtcgctacgcaccaccaaggttttacacagtgat
gaccgccataccttaatggaatgggcgcaggcacaagattgcacactgtatttgcaccaa
ggtgatagggatgccgagcgtttgacggggccagccccctactatcaagtggctggttgc
caattggcatttgcccccagtgactttattcaggtgaacgctagggtcaatcaacaaatg
gtggcgcaggcacgcgagtggttagcactggagcaagacgatcgcgtgttggatcttttt
tgtggcttgggtaactttagtgtgccgatggctcagcatgttaaccaagtggttggcgtt
gaaggcgtacaggcgatggttaatcaagcggcggataacgcagcggccaaccagtgtgat
aacgcctctttttatcaagccgatttaaacagcgaccagctgatgggtgagtgggtgcaa
caggattttaccaaaatcttactcgatccggcacgcgcaggggctgctggtgtcatagac
tttgtggcacaatctaatgcttcacatattgtttatgtgtcttgtaatccagccacgttg
gcacgtgatgcacgtgtactgctcgataacggctatcagttagtgaagctgggtatgttg
gatatgtttccacaaacaggacacatggagtcgatggccttgtttatgccggtaaagaaa
aaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (20)   
   Pfam (20)   
All databases (27)   

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