KEGG   Salinivibrio kushneri: FCN78_07115
Entry
FCN78_07115       CDS       T05956                                 
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
sks  Salinivibrio kushneri
Pathway
sks03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sks00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    FCN78_07115 (sbcB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sks03400]
    FCN78_07115 (sbcB)
Enzymes [BR:sks01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     FCN78_07115 (sbcB)
DNA repair and recombination proteins [BR:sks03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     FCN78_07115 (sbcB)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     FCN78_07115 (sbcB)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      FCN78_07115 (sbcB)
SSDB
Motif
Pfam: Exonuc_X-T_C RNase_T DUF3922 GAT
Other DBs
NCBI-ProteinID: QCP02185
Position
1:1502558..1503979
AA seq 473 aa
MTDADQPSFFFYDFETFGTHPGKDRPCQFAGVRTDSDFNVIGEPLVLYCQPPNDYLPAPE
ACLVTGITPQLALKKGLPEPEFIAQIHAAFSQPNTCIVGYNNVRFDDEVTRYTLYRNFFD
PYGWSWQNGNSRWDLLDVMRACYALRPDGIEWPYDDNGKPSFKLENLSVANGIEHSDAHD
AMADVHATIELAKKIKAAQPRLFDYLLKHRNKNKIKHLIDVVNMTPLVHVSGMFGTERGN
TSWIVPVAWHPDNPNAVITVDLARDPAPLFELDADALRERLYTPHHALADNELPAPLKLV
HINKCPVLADAKTLRPDDATRLGVDREGCLQHLKTLKAAPELREKLVNVFADAKPFDDQD
VDTALYAGFFSKSDRSAMDIIRARDPENLAALDLSVDDWRIKPLLFRYRARNYPWTLTEA
EQKKWFMHRRDYFETHLPAYMDNLQHLAEQHQAEEDKVRILKAVYHYVESLVG
NT seq 1422 nt   +upstreamnt  +downstreamnt
gtgacagacgccgaccagccaagcttttttttctacgactttgaaacattcggcacccat
ccaggtaaagacagaccttgccaatttgctggcgtgcgtaccgacagtgactttaatgtc
atcggtgaacccttagtcctgtactgccaaccacccaatgactacttaccggcaccggaa
gcctgtttggtcaccgggattacgccacagctggcattgaaaaaaggcttacccgagccg
gaattcatcgcacaaatccatgctgctttctcgcaaccgaatacctgtatcgttgggtat
aacaacgtccgtttcgatgatgaagtgacgcgctacacgctgtaccgcaacttttttgac
ccatacggctggagctggcaaaacggtaattctcgctgggatttgctcgatgtgatgcgc
gcctgctacgcactgcgccccgacggcattgaatggccctacgatgacaacggtaagccc
agctttaaactcgaaaacttatccgtcgccaacggtattgaacatagcgacgcgcacgat
gccatggccgatgtacacgcgaccatagagctggcgaaaaagatcaaggcggcacagcca
cggctatttgattatttgttaaaacatcggaataaaaacaaaatcaagcatctgattgat
gtggtcaatatgacaccattggttcatgtttccggtatgttcggcacagagcgcggcaac
accagctggatcgtgcccgtcgcctggcatcctgataaccccaacgctgtgattactgtc
gatctggcccgtgatccagcccctttgtttgaattggatgccgatgcgcttcgcgaacgt
ttgtatacgccccatcacgcactcgctgacaatgagttacccgcaccactcaagctggtg
catatcaataaatgtcccgttctcgccgatgcgaaaaccttacgccccgacgatgccacc
cggctcggtgtggatcgcgaaggctgcttacaacacctaaaaacattgaaagccgcgcca
gaattgcgtgaaaaactggttaatgtgtttgccgatgccaagcctttcgacgatcaggac
gtggatacggccctgtatgcgggctttttctcgaaaagcgatcgcagtgcgatggatatc
atccgtgcacgcgatccagagaatcttgccgccctggatctcagcgttgacgactggcgt
atcaagccactgttattccggtatcgcgcgcgcaattacccgtggacgctgaccgaagcc
gagcagaaaaagtggtttatgcatcgacgtgattactttgaaacacaccttcctgcctat
atggataatctgcagcacctcgctgaacagcaccaagcggaggaagataaggtgcgcatt
ttaaaagcggtttaccactatgtggaatcactggttggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (4)   
   Pfam (4)   
All databases (12)   

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