KEGG   Streptomyces koyangensis: D0C37_09190
Entry
D0C37_09190       CDS       T06436                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sky  Streptomyces koyangensis
Pathway
sky03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sky00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    D0C37_09190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sky03400]
    D0C37_09190
Enzymes [BR:sky01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     D0C37_09190
DNA repair and recombination proteins [BR:sky03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     D0C37_09190
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_primase_S
Other DBs
NCBI-ProteinID: AXQ54756
UniProt: A0A385D8S0
Position
2197336..2198241
AA seq 301 aa
MTPITHVEGRRLALSNLDKILYPATGFTKGEVLHYYASVAPVLLPHLRDRPLSFLRYPDG
AEGETFFAKNVPPGTPDWVRVATVPRSARDTTSARQVVVDDLPSLMWAANLVTEFHTPQW
RAEAPAVADRLVLDLDPGEPAGIAECCEVALLLRERLAADGLTAFAKTSGSKGLHLLVPL
TGAPSREVTAYAKELAVAAGQEAPELVVHRMAKRLRGGKVFVDFSQNSASKTTATPYTLR
ARPHPTASTPLTWDEVATRGEDDRLPGLRIAADEAAARVARYGDLLAPLVTGEAAAPLPG
S
NT seq 906 nt   +upstreamnt  +downstreamnt
atgacgcccatcacccacgtggaggggcggcggctcgcgctcagcaacctcgacaagatc
ctctatccggccaccggcttcaccaagggtgaggtgctgcactactacgcctccgtggcc
ccggtcctcctgccgcacctgcgggaccggccgctctccttcctgcgctatccggacggc
gcggagggcgagaccttcttcgccaagaacgtgccgcccggtacacccgactgggtgcgg
gtggcgacggtgccccgctccgcgcgggacaccaccagcgcccggcaggtggtcgtggac
gacctgccgtcgctgatgtgggcggccaacctggtgaccgagttccacaccccgcagtgg
cgggccgaggccccggccgtcgccgaccggctcgtcctggacctcgacccgggcgagccg
gccgggatcgccgagtgctgcgaggtggcgctgctgctgcgggagcggctggccgccgac
gggctgaccgccttcgccaagacctccggctcgaaggggctccacctgctggtcccgctc
accggcgcgccctcgcgcgaggtgacggcgtacgcgaaggagctggcggtggcggccggg
caggaggcgccggagctggtggtgcaccggatggcgaagcggctgcgcggcggcaaggtc
ttcgtcgacttcagccagaactccgcctcgaagaccaccgccaccccctacaccctgcgc
gcccgcccgcaccccaccgcctcgacccccctgacctgggacgaggtcgccacccggggg
gaggacgaccgcctgcccggcctgcggatcgcggcggacgaggcggcggcgcgggtggcg
cggtacggggacctgctggcgccgctggtcaccggggaggcggcggcgccgctgccgggg
agctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (17)   

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