KEGG   Seriola lalandi dorsalis (Yellowtail amberjack): 111645358
Entry
111645358         CDS       T06058                                 
Symbol
col24a1
Name
(RefSeq) collagen alpha-1(XXIV) chain
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
slal  Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:slal00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    111645358 (col24a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:slal00536]
    111645358 (col24a1)
Glycosaminoglycan binding proteins [BR:slal00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   111645358 (col24a1)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_3
Other DBs
NCBI-GeneID: 111645358
NCBI-ProteinID: XP_023250298
Ensembl: ENSSLDG00000001181
Position
Unknown
AA seq 1727 aa
MHLGAQRTRSGHVSAAATWNFLLLLSVCSAVLSGDEDYLAQGVDILYRLGLTAQSSTENP
YEKTSSSSTTYTTAPSHSNFPLSGYGVLLDSNSLYEAPAGSLFPPEIGEEFSVVVSLSSW
RANNAFLFSVKDGRDRLRFGIQLLPRRVVVYTAEKASIYFTYNWQDGRQHPFAVGVRARS
VSFYADCGAVQQQEHTLGRSQTLGDSGGLFTLGRMNSKAASFNGRVCQLDIYPSAQAAAH
YCNYLKKQCRLADTYRLPLPHPELDIEANDPPSNPSTKSLVGIAATHHTPIKITPAVKLS
PGSSVTQNSALSPSAQPHLRDQSHISALDHLAHSTTSLLQPESPTLPALSGRAALDLTYS
TTITTTKNVLAGSRGQGDTDHSENSTEEESSSGSLQTPDATPGLIPPVRQSRVKEGLRNN
SITSSRDSRFGSQLTHQLLDTHLRANGTTLYRENQVDTSEHHDLDGSYDDVDMGGYDYGY
EEPDFFYDYEDGFHGAKGEPGPPGPPGPPGLPGPPGKRGSRGPTGPHGNPGQPGPPGPKG
SKGDPGLSPGQAPPGEKGDRGPPGLPGPDGFPGPPGPKGYPGPPGLPGEQGIPGPPGEAG
AAGYPGRQGSAGPEGDPGPKGVRGFIGPPGVAGPPGLEGEKGIPGPVGNPGPKGRHGVVG
DAGERGPPGPDGNEGPVGGIGISGFPGLRGDPGPEGLRGLPGLVGPQGPAGRAGLPGLKG
DKGEVGQRGQPGEMGYQGDKGAAGVPGPTGPRGKPGPPGRIGEMGAQGPHGPPGPEGFPG
DIGVPGPNGPPGPKGLQGARGPQGPQGPKGIQGEEGPLGPPGSAGPTGRSGRKGYIGEPG
PEGLEGEKGDMGNVGKIGPQGPVGLIGIAGVIGVPGEKGDRGPAGPTGPVGEKGPRGYPG
LPGSPGDIGMQGAPGPQGQRGTPGIAGAKGRRGPQGPDGPLGEPGPEGTKGERGDIGQKG
EPGFIGKAGSPGERGPPGKPGKSGIPGSTGERGPHGEPGLKGPPGEAGPDGEQGPEGGPG
AEGEPGAIGEPGVKGDIGPPGAEGEQGQEGIRGPPGPPGEDGPQGKDGAKGEPGEHGPIG
EQGDKGIEGDPGPAGPPGEPGKQGFRGPEGKLGPQGNRGRHGKKGERGPPGLAGETGTRG
DIGQPGEPGLKGARGTRGTPGRPGVMGMEGQPGLAGYTGHPGKPGPIGPPGPKGEKGYPG
EDNKTPGLPGPLGEPGPPGERGERGEPGDEGYQGHFGTIGSRGTVGPQGPPGSPGLPGEP
GPKGETGALGSAGKKGARGLSGAPGIEGPIGLPGLMGMNGYQGLDGLPGLTGLPGLTGKQ
GRQGQRGLVGLEGFAGRPGPRGEVGLPGLPGERGPPGQKGESGLPGDKGASGNNGIQGAT
GDQGRKGDPGPKGQPGESGDLGMFGLQGFPGPKGPNGDWGFRGFPGPKGPMGTLGFSGPV
GPEGMIGPMGKPGLRGPKGSSGEMGPQGPQGTPGPRGPPGAPGPTRQIYDDSAVYSLSDS
NAALRTESFQNTEMSLQDQNTEIVKTLRYLSSVIDSIKKPLGTKENPARVCKDLLDCQHK
LKDDWFWIDPNLGCTSDAFKVFCNFTAGGQTCLHPLASNKMVFDVGKVQMKFLHLLSTEA
SHSITLHCLNDPPYVTMDSFTSTGTTHKENSTLRFRGWNKQMFEKDTLLEPHVLQDECKI
QDGSWHQSRFFFHTQDSRQLPIVDMQEFPTSQPNSQQHIEIGPVCFL
NT seq 5184 nt   +upstreamnt  +downstreamnt
atgcatttaggagctcaacggacaaggagtggacacgtttccgcggcagcaacgtggaac
tttctcctgctcctgtcagtatgctcagcagtactctctggagacgaagactacctagct
caaggagtggatatcctctatcgattggggcttacagctcaaagcagcacagagaatccc
tacgagaagacaagctcatcttcgactacttacaccactgctccctcacattcaaatttt
cctttgtctggatatggggtattactcgactcaaactccctctatgaggctcctgcaggc
agtctgttcccgccggagattggcgaggagttttctgttgtggttagtctaagctcttgg
cgagcaaacaatgcttttctttttagtgttaaagatggcagggacaggctgcgttttggc
attcagctgctgccacgcagagtggtggtttacactgcagagaaagcctccatctacttc
acctacaactggcaggatgggcgccagcacccttttgctgttggtgttcgtgcacgctcc
gtgtccttctatgcggattgtggggcggtgcagcagcaggagcacaccctggggagatct
cagacactcggggattctgggggtctcttcactctgggaaggatgaactccaaagcggcg
tcgtttaatggtcgagtctgccagctagatatctatccctcggctcaagctgccgcgcac
tactgcaactaccttaaaaaacagtgccggctggccgacacttaccgattgcctttgcca
catcccgaattggatattgaggcaaatgaccccccatctaatccctcgacaaagtccctt
gttggaatagcagctacccatcatacccccataaaaatcacgccagctgtcaaactgtcc
ccaggtagttcggtcacacaaaattcagctctcagcccatcagcgcaacctcatctgagg
gaccagagccacatttccgcattggatcaccttgcccactccaccacatctttgcttcaa
cctgaaagccccaccttacctgccctgagtggacgagcagctctagatctcacctatagc
acaactatcaccactaccaaaaatgtgttggcagggagtaggggccagggggacactgat
cactcagaaaacagcacagaggaagagagcagctctgggagcctgcagactccagatgcc
accccaggcctgattcccccagtcaggcaaagtcgagtaaaggaaggactcaggaacaac
tccatcaccagctccagggactcacgctttgggtcccaactgactcatcaactcctggat
actcatctgagagccaatggcaccactttataccgagagaatcaggtggacacctcagaa
catcatgatctggatggcagctatgatgatgttgacatgggaggatatgattatggatat
gaggagccagacttcttctacgactatgaagatggtttccatggcgctaagggagagcca
ggtcctccgggtcctcctggtccccctggtttacctggtcctccaggaaaaagaggttct
cggggtcccactggtccacatggaaatcctggacagcctggaccacctgggcccaagggt
tcaaagggagaccccggactgtctccaggccaggctccaccaggagagaagggtgacaga
ggtccaccaggtctgcctgggccagatggatttccaggtccaccgggtcctaaaggttat
ccagggccacctggactgccaggagaacaaggcataccaggacctcctggggaagctggg
gctgcaggttaccctggcaggcagggctcagctgggccagaaggtgacccagggcctaaa
ggtgtccgtggtttcattggacctcctggtgttgctgggccaccagggctggagggggaa
aaaggcattcctggtcctgttggaaatcctggccccaaaggaagacacggtgttgtgggt
gatgcaggggagagggggcctcctggtcctgatggcaatgaggggcctgttggtgggatt
ggcattagcggctttcctggtctaaggggggacccagggcctgagggactgcgaggactg
cctggtctagtgggacctcagggcccagcaggacgagccggcctgcctggattgaaaggt
gataagggtgaagtgggacaaaggggccaaccaggagagatggggtaccaaggtgataag
ggtgccgctggtgtgcctggtcccactgggccaagagggaaaccaggaccaccgggtaga
attggagagatgggggcacaaggaccacatggtcctccaggaccagaggggtttcctggc
gacattggagtaccagggcctaacggtccacctggaccaaagggtttgcagggagccaga
gggccccaaggcccacaggggccaaaaggaatacagggtgaggaaggaccacttggccca
cctgggagcgcaggccctactgggagatctggaaggaaaggctacataggtgaacctggt
cctgagggtttggagggagagaaaggggacatgggaaatgttggaaaaattggaccacaa
ggtccagtaggcctgattgggatagctggtgtgataggagttcccggtgaaaagggcgac
cgtgggccagcgggtccaactggtccagtcggggagaaggggccaaggggctatccagga
ttgccaggaagtccaggcgacatcggcatgcaaggtgcacctggtccacagggacagagg
ggtactccaggaattgctggggcaaagggcaggagggggccccagggtccagatggccca
ctgggagaaccaggccctgagggcaccaagggtgaaaggggtgacattggacaaaaagga
gagccaggattcattggcaaggctggcagtccaggagagagaggccctcccggaaagcct
ggtaaatcaggtattccaggcagcactggagagaggggaccacatggggaaccaggactc
aaaggacctccaggagaagctggacccgatggagagcaagggcctgaaggtgggcctggt
gcagagggggagccaggtgccatcggagagccaggggtaaagggtgatattgggcctcca
ggagctgaaggggagcagggacaggaggggataagaggcccacctggtcctccaggtgaa
gatggccctcaagggaaagatggagccaagggtgagcctggtgaacatgggccaattgga
gagcaaggtgataaagggatagaaggagaccctgggcccgcaggaccacctggagagcct
ggaaaacaaggctttcgtgggccagaaggaaaactggggccccaaggcaacagaggacgg
catggaaagaagggagagagaggtcctccaggtcttgctggtgagactggcacacgaggg
gacattggccagccaggcgagccgggactgaaaggtgccaggggaactcgaggcacacca
ggtcggcctggagtcatggggatggaaggacaaccaggactggcaggatacacaggtcac
cctggcaagcctgggcccattggaccaccaggacctaaaggcgaaaagggttacccaggc
gaggacaataagaccccaggactaccagggcccttaggtgaaccagggcccccaggagaa
cgaggagagcgtggagagccaggggatgaagggtatcagggccattttggtaccattgga
tctcgtgggactgttggaccacaaggcccaccgggatcaccaggcctccctggagaacca
ggcccaaaaggagagacaggagctctgggctcagcaggaaagaaaggagcaagggggctg
agtggcgctcctggcattgaagggccaattggtttacctggacttatgggaatgaatggt
taccaagggttggatggtctcccaggactgactggcttaccaggactaacaggaaaacaa
ggacgtcagggtcagagaggcttggtgggactggagggatttgctggacgtccaggcccc
agaggagaggttggacttcctggactacctggagaaagaggacctcctggtcagaagggt
gaatcaggcctaccgggagacaagggagcctcaggaaacaatggcatacagggggctact
ggtgaccagggcaggaaaggtgacccaggacccaaaggacaaccaggggaatcaggagat
cttgggatgtttggtttacagggctttccagggccgaagggaccgaatggtgattgggga
tttagaggcttccctggccctaaaggccctatgggtactctgggattctctggacctgtt
ggccctgaaggaatgatcggcccaatggggaaacctgggctaaggggtccaaaaggaagc
agtggcgaaatgggccctcaaggaccacagggaactccaggacccagaggacctcctggt
gctccaggtccaacaaggcagatatacgatgactcagcagtctacagtctatcagactct
aatgctgccctcaggacagagagtttccagaacacagagatgtccctgcaagaccagaat
acggagatagtgaagactctgcgttacctgagcagtgtgattgatagcatcaaaaagcct
ctgggcacaaaggagaacccagctcgtgtatgtaaagatctgctggactgtcaacacaag
ctcaaagatgattggttctggattgatccaaatctgggctgtacttctgacgccttcaag
gtcttttgcaactttaccgcagggggacagacctgcttacatccactggcctctaataag
atggtgtttgatgtagggaaagtccaaatgaaatttctccatttattaagcactgaggcc
agccacagcatcacactccactgcctgaatgatccaccttatgtcacaatggacagcttc
acctccaccggaaccacacacaaagaaaactccacacttcgttttcgtggctggaacaaa
cagatgtttgagaaagacacactacttgaaccacatgtgctacaagacgagtgcaagatc
caagatggcagctggcaccagtcacgtttcttcttccatactcaggacagtcgtcagcta
cctattgtagacatgcaggaatttcccacatcacagcccaacagtcagcaacatatagaa
atcggtccagtctgcttcctctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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