KEGG   Seriola lalandi dorsalis (Yellowtail amberjack): 111655825
Entry
111655825         CDS       T06058                                 
Symbol
nxf1
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
  KO
K14284  nuclear RNA export factor
Organism
slal  Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03008  Ribosome biogenesis in eukaryotes
slal03013  Nucleocytoplasmic transport
slal03015  mRNA surveillance pathway
slal05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:slal00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    111655825 (nxf1)
   03015 mRNA surveillance pathway
    111655825 (nxf1)
   03008 Ribosome biogenesis in eukaryotes
    111655825 (nxf1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    111655825 (nxf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:slal03019]
    111655825 (nxf1)
   03009 Ribosome biogenesis [BR:slal03009]
    111655825 (nxf1)
Messenger RNA biogenesis [BR:slal03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     111655825 (nxf1)
   mRNA cycle factors
    Stress granule specific factors
     111655825 (nxf1)
Ribosome biogenesis [BR:slal03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    111655825 (nxf1)
SSDB
Motif
Pfam: Tap-RNA_bind TAP_C NTF2 LRR_4 LRR_9 LRR_8
Other DBs
NCBI-GeneID: 111655825
NCBI-ProteinID: XP_023263122
Position
Unknown
AA seq 670 aa
MDRVNVCQRSYPNLVVTRVLDEDNEDFLSRREVRSTDFMVLGEHDDRTAPQFRNRKGRGS
HKGRSYDRSRRDRQRGGHPGGFGGPGPRSRLDDTDGDVTMSDGAQDNNSQHRFNPYGRPF
RKGDGRFDRDRRQGKGGGGGRGGGGGGFRGGDRGGGSGSGGGKNQSGWSKVTIPHGRKYD
KKWLLTALQNICSVPFTPVQYHVDHDRAHFYVDDSPAANALRKCSHKITDSDGYKVEVHV
NGSAPPSFLLSDLKPDHLEQLKQCMAKRFDGSQQALDLNNIRTDPDLVSHKIEVTLNRKT
HMEAVIRIIEENIPELACLNMSNNRIHKLDELAELVTKVPNLKTLNLSHNELKSDRELDK
VKGLKLVELWLNRNPLCLYFKDQASYISAVRQRFPRLLKLDGHDLPPPIGFDVETPTTIP
PCKGSCFGSDEIKALILRFLQQYYSIYDSGDRQPLLDAYHDGASLSLTTPYSTQNPSRSS
LGEYHKDSRNLKRIKDSTMRFRLLKHTRLNVVAFLNELPKTQHDIASFTVDVNTYTNTLL
SFTVSGVFKEVAVDGKSRDSTMAFSRVFITVPAGGSGLCIVNDQLFIRMATTEEIRRAFV
APAPTPSSSPVPTLTAPQQEMLTAFSQKSGMNLEWSQKCLQDNEWDFNRAAQIFTQLKTE
GQIPDVAFIK
NT seq 2013 nt   +upstreamnt  +downstreamnt
atggaccgtgtgaatgtatgtcagagaagctaccccaaccttgtggtcacacgtgtactg
gatgaagacaatgaggactttttgtcgaggagagaggtcagaagcactgatttcatggtc
ctaggagagcatgatgatagaaccgcaccacagtttcgcaaccgtaaaggccgaggttcc
cacaaaggtcggtcgtatgacaggtcccgcagagaccgccaacggggaggccacccaggt
ggctttggtggtcctggaccacggtctaggcttgatgatactgatggagatgtcactatg
agtgatggcgcacaggacaacaattcccagcacagattcaacccatacggaagacctttt
cggaaaggagatggacgatttgaccgagataggcgacaaggcaaagggggaggaggcggt
agaggaggaggaggcggcggcttcaggggaggagaccgaggtggaggaagcggcagtgga
ggagggaaaaaccagtcaggctggtccaaagtaacaattccacatggaagaaaatatgac
aaaaaatggttattgacagctcttcagaacatctgttcagtccccttcacacctgtacag
taccatgttgaccatgacagggcgcatttctacgtggatgattcccctgctgccaatgct
ttacgcaaatgttctcacaagatcactgactcagatggttataaggtggaggtacacgtc
aacggcagcgctccaccatctttcctcctctctgacctgaagccagaccacctggagcag
ctgaagcaatgcatggcaaaacgttttgatggttcccagcaagcacttgacttgaacaac
atccgaacagaccctgacctggtgtcccacaaaattgaagtcaccttgaatcggaagaca
cacatggaagctgtcatcaggatcattgaagaaaacattccagagctggcttgcttgaac
atgagcaacaaccgtattcacaaactggatgaactcgctgagttggttaccaaggtgcct
aatctgaagacccttaacctttcccacaatgagctgaagtccgaccgggagctggacaag
gtgaaaggcctgaagctggtggagctgtggttgaacaggaaccctctgtgtctctacttc
aaggatcaggcgtcatacatcagtgctgtgcggcagaggtttccccggcttctcaaactg
gatggtcatgacctccccccacccattggatttgatgtggagacacccaccaccatccct
ccgtgcaagggcagctgttttggttccgatgaaatcaaggctctcatccttcgcttcttg
caacagtactacagtatatacgactctggggacagacagccgcttctggatgcttaccat
gatggagcatctttatcgctcacaacaccttactccacccagaatccctccaggagcagt
ctgggagagtatcacaaagacagtcgaaacctgaagaggatcaaagactccacgatgaga
tttcgactcctgaagcacacgcgactgaacgtagtggctttcctcaacgagttgcccaaa
acacagcacgacatcgcctcctttactgtcgatgtgaacacctacacaaacacactactg
tcattcacagtgagtggagtcttcaaagaagttgcggttgatggtaaatcccgagactcc
accatggccttctctcgagttttcatcacagtcccagcagggggttctggtttgtgcatc
gtgaacgaccagctcttcatccgtatggccacaacagaggagatccgccgcgcttttgtg
gctcccgccccgactccatcttccagccccgtccccaccctcactgcaccgcagcaagag
atgcttacagccttctcacagaagtctggcatgaacctggaatggtcccagaagtgtctg
caagacaatgagtgggatttcaacagggcggcacaaatcttcactcagttaaagacggaa
ggccagatccctgatgttgctttcataaaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (21)   

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