KEGG   Staphylococcus lugdunensis HKU09-01: SLGD_01239
Entry
SLGD_01239        CDS       T01177                                 
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
slg  Staphylococcus lugdunensis HKU09-01
Pathway
slg03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:slg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    SLGD_01239
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:slg03400]
    SLGD_01239
Enzymes [BR:slg01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     SLGD_01239
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     SLGD_01239
DNA repair and recombination proteins [BR:slg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     SLGD_01239
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS NFACT_N Zn_Tnp_IS91 Zn-ribbon_8 DZR HscB_4_cys
Other DBs
NCBI-ProteinID: ADC87330
Position
1280208..1281080
AA seq 290 aa
MPELPEVEHVKRGIEPFIINTIIKSVTFSSKVIDGKSDGKETIIKGINLDGFRQFTEGYK
IYKVERRSKYINIYIEKNQECRVLISHLGMAGGFFIVNHLDEIHAPNYRKHWHVIFHLSN
GKLLVYSDIRRFGEIRNVQALNNYASFKNMAPEPFDESALDHYLTYLNQPKVKHKPIKQL
ILDHKVIAGCGNIYACEALYRAAIHPATEVQSLNQQARQNLFLEVQAVLNEGIEYGGTSI
SDYRHADGKTGTMQLRLNVYKQQQCKKCGHKIEQQVIATRNSHFCPVCQK
NT seq 873 nt   +upstreamnt  +downstreamnt
atgccagaattaccagaagttgaacatgttaaaagaggtattgaaccttttataattaac
acgattataaaatcagtaacattttcttcaaaagtcattgacggcaagtcagacgggaaa
gaaacaatcattaaagggattaatcttgatggttttaggcagtttacagagggttataaa
atatataaagtagagcgacgcagtaaatacattaatatttatattgaaaagaatcaggag
tgccgtgtattgattagtcatttaggaatggcaggtggtttttttatcgtaaatcattta
gatgagatacatgctccaaactatagaaaacattggcatgttatttttcatttaagtaat
ggtaaattacttgtttattcagatattcgacgttttggtgaaattagaaatgtacaagca
ctaaataattacgcatcgttcaaaaatatggcgcccgaaccttttgacgaaagcgcatta
gatcattatttgacttatttaaaccaacctaaagtaaagcacaaacctattaaacaatta
atccttgatcataaagttattgcaggttgtgggaatatctatgcttgtgaggcattatat
agagctgcaatacatcccgccactgaagtgcaaagcttaaatcagcaagcaagacaaaat
ctttttttagaagttcaagccgttttaaatgaaggtattgagtatggcggaacgagtatc
tcggattatcgtcatgcagatggtaagacaggcacgatgcagttacgcttaaatgtatat
aaacaacagcaatgtaaaaaatgtggacataaaatagaacagcaagtgattgctacacgt
aatagtcatttttgtccggtttgtcaaaaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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