KEGG   Spirosoma linguale: Slin_2449
Entry
Slin_2449         CDS       T01156                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
sli  Spirosoma linguale
Pathway
sli03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sli00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Slin_2449
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sli03019]
    Slin_2449
Messenger RNA biogenesis [BR:sli03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Slin_2449
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_22 CMS1 DUF530
Other DBs
NCBI-GeneID: 8726193
NCBI-ProteinID: ADB38469
UniProt: D2QGG1
Position
2952331..2953788
AA seq 485 aa
MQFSELSLIDPILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPIL
QLLSEERSKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRHLNIRNTVIFGGVSQHSQV
NTLKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPT
HRQSLFFSATMPPDVAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGKEDKRKLLVHI
LDDKNIKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRETRVL
VATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAEETEYLRD
IHKLIGKRVPVIDNHPYVLDIATATVTPAPARQGQGRGGNGGNRNGGGRSGGSGSFNRNG
NNNNSRRADNSGPARSTDQRSSSSDGSYRRDENSAPKRPSSRPSQPQSRGTGNSRFSNSS
SDKNY
NT seq 1458 nt   +upstreamnt  +downstreamnt
atgcaattttccgaattatcattaattgaccctatcctgaaggccctaaccgaagaagga
tacaccaacccgacacccatccaggaaaaagccataccaatcttgttaagccgccgggac
ctattaggctgcgcccaaaccggaactggtaaaacagccgcttttgccatccctatttta
caactgctaagcgaagaacggagcaaaagtactggcggtccacgccggatcaaaaccctc
attctaacccccacccgcgagttagccattcagatcgccgaaagctttacagcctatggc
cgtcacctgaacatccgtaatacggttatttttggtggtgtttcgcaacattcgcaggtg
aacacgctcaaagcgggtgttgatgtgctgattgctacccccggccgtttgctcgatctc
atgaaccagggctttatatcgcttcgggatgtacagttctttgtccttgacgaagccgac
cggatgctggatatgggctttatccatgacgttaagaaagtcatcaccaaattgcctacg
catcggcagtcgctgtttttctcagcaacgatgccccccgatgttgccaagctagctgat
acgatcttaaataaccccgccaaagtagaagtaacacccgtatcctctacggccgatact
attgaacaggctatgtattttgtcggaaaagaagataagcgtaaactgcttgttcatatc
ctcgacgataaaaacatcaaatctgcgctggttttcgcccgtaccaaacatggtgccgac
aaagtcgtaaaagacttgctgaaggcgggtatcggtgctgaagccatccatggcaacaag
tcgcaaaatgcccgccagcgtgccctctcgaacttcaaaagccgggaaacgcgggtgctg
gttgcaaccgatattgccgctcgtggtatcgacgtcgacgaactgtcgcacgtgatcaac
tacgaactgcctaatattccggaaacgtacgttcaccggattggccggacgggccgtgca
ggccatgatgggattgccctgtcgttctgcgacgccgaagaaactgagtatctgcgcgac
atccataagctgattggcaaacgggttccggtaattgacaaccatccttacgtactcgac
attgctacggcaaccgttactccggctcctgcccgacagggacaaggtcggggtggcaac
ggcggcaatcggaacgggggtggtcgttcgggcggttccggttcgttcaatcggaacggg
aacaacaataacagccgtcgggcagataacagcggaccagcccgctcaacagaccaacgg
tcttcgtcttcggacggttcttaccgtcgggatgaaaacagtgcaccgaaacgacccagc
agtcgtccgtcgcagccccaaagccggggcactggcaacagtcgctttagtaactccagt
tctgataaaaattattaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (39)   

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