KEGG   Sulfuricaulis limicola: SCL_1309
Entry
SCL_1309          CDS       T05241                                 
Name
(GenBank) exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
slim  Sulfuricaulis limicola
Pathway
slim03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:slim00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SCL_1309
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:slim03019]
    SCL_1309
   03016 Transfer RNA biogenesis [BR:slim03016]
    SCL_1309
Enzymes [BR:slim01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     SCL_1309
Messenger RNA biogenesis [BR:slim03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SCL_1309
Transfer RNA biogenesis [BR:slim03016]
 Prokaryotic type
  tRNA degradation factors
   SCL_1309
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 RNase_II_C_S1 Rrp44_S1 OB_Dis3
Other DBs
NCBI-ProteinID: BAV33620
UniProt: A0A1B4XFN9
Position
1314739..1317018
AA seq 759 aa
MSTRKPKKPFQDPMAEREQQKYEHPVPSREAILAVLTERNELLPFRELADALAVHGERDE
DAFSRRLRAMERDGQILKNRRGLYGLAHKMDMVSGRVSGHPDGFGFLIPDEEGEDLFLSP
AEMRQLMHGDRVMARVTGVDQRGRREGAVVQVLERAHPTVVGRFVTQHGMSFVVPSDKRI
TQDIAISRGDEGAAKENQLVVAEITLPPTRHRPPAGRVAEVLGDHMAPGMEIEVAIRAHS
IPHVWPGDVLDEIKGLTPEVPAHASDGRFDLRGIPLVTIDGEDARDFDDAVFAEHDGRQW
RLIVAIADVSYYVKPGTALDREAYQRGNSVYFPQNVVPMLPEILSNGLCSINPKVDRLCM
ACEMLIDAHGNISRYRFHEAVMRSRARLTYTKVAAMLVEKDAALRQEYAEVVPHLEALYG
LYKILHNARMKRGAVDFELPETRIVFDEQRKIREIVPLQRNDAHRLIEECMLAANVCAAE
ILKKHKVPAPYRIHEGPTTEKLSNLREFLTEIGLSLGGGDKPQAQHYSKLIKQVEKRQDS
RLIQTVLLRSLSQAVYSPDNIGHFALGYPNYTHFTSPIRRYPDLLVHRAIKDILAKRPAT
ITPELAKQQGEHCSLTERRADEATREVTRWLKAEFMMDKIGEEFDGYISGVTNFGIFVEL
VQFYVDGLVHITALGNDYYHFDAAHHRLMGERTRQIYRLGDKVRVRVARVDLDETKIDFE
LVGVESTGRGKAGKAPKQGRPEGKRAPKSSAKGSRKRRR
NT seq 2280 nt   +upstreamnt  +downstreamnt
atgtcaacgcgaaaacccaaaaaaccgtttcaagaccccatggcggaacgggaacagcaa
aaatacgaacaccccgttcccagccgcgaggccattctcgccgtgctgaccgaacgcaac
gaactgttgccgttccgcgaactggcggatgcgctcgccgtgcacggcgagcgcgacgaa
gatgccttcagccgccgcctgcgcgcgatggaacgcgacggccagatactgaaaaaccgt
cgcggcctgtatgggctggcgcacaagatggacatggtgtcggggcgcgtcagcggccat
ccggacggtttcggtttcctgatccccgatgaagagggcgaggacctgttcctttctccc
gccgaaatgcgccagctgatgcacggcgaccgcgtgatggcgcgcgtcaccggcgtcgac
cagcgcggccggcgcgagggcgctgtggtccaggtgctggagcgcgcgcacccgaccgtg
gtcgggcgcttcgtcacacagcacggcatgagcttcgtggtgccctccgacaaacgtatc
acccaggacattgcgatctcgcgcggcgacgaaggcgccgcgaaggaaaaccagctggtg
gtggcggaaatcacgctgccgccgacgcgccatcgcccgcccgcgggccgcgtggcggaa
gtactcggcgaccatatggcgccgggtatggagatcgaggtcgccattcgcgcgcacagt
attccgcatgtctggccgggcgatgtgctggacgagatcaagggattgacacccgaagtc
ccggcgcacgccagcgacggacgtttcgatctgcgcggcattccgctggtcacgatcgac
ggcgaggacgcgcgtgatttcgacgacgccgtgtttgccgaacacgacggtcgccagtgg
cgcctgatcgtggcgattgccgatgtatcctattacgtcaaacctggcacggcgctggac
cgcgaggcctaccagcgcggcaactcggtgtatttcccgcaaaacgtcgtccccatgctg
ccggaaatattgtcgaacggcctgtgctcgatcaatccgaaagtggaccgcctgtgcatg
gcctgcgagatgctgatcgacgcccatggcaatatcagccgctaccgctttcacgaggcg
gtcatgcgctcgcgcgcgcgcctgacctacaccaaggtcgccgccatgctggtggagaag
gacgccgccctgcgccaggaatatgccgaggtggtaccgcatctcgaagccctgtacggc
ctgtacaaaatcctgcacaacgcgcgcatgaagcgcggcgcggtggacttcgagctgccg
gagacgcgcatcgtgttcgacgaacagcgcaagatccgcgagatcgtgccgctgcagcgc
aacgacgcccaccgcctgatcgaggaatgcatgctggcggccaacgtctgcgccgcggag
attctgaaaaaacacaaagtgcccgcaccttaccgtattcatgaaggaccgaccacagag
aagctgagcaacctgcgcgagttccttaccgagatcggtctctccctcgggggtggtgac
aagccgcaggcgcagcattattccaaactcatcaagcaggtggagaagcgccaggattcg
cgtctgatccagaccgtgctgctgcgctcgctgtcgcaggcggtgtacagcccggacaac
atcggccacttcgcgctcggttacccgaactacacccatttcacctcgccgatacgccgc
tatccggacctgctggtgcaccgcgccatcaaggacatcctggcgaagcgcccggcgaca
atcacgccggagctggccaagcagcagggcgagcactgttccctgacagagcgccgcgcc
gacgaggccacgcgcgaagtgacgcgctggctcaaggccgagttcatgatggacaagatc
ggcgaggagttcgacggctacatcagcggcgtcaccaatttcggcatcttcgtggagctg
gtgcagttctacgtggacgggctggtgcacatcaccgcgctgggcaacgattattatcac
ttcgacgcggcgcatcatcgcctgatgggcgagcgcacgcgccagatctaccgcctcggc
gacaaggtgcgcgtgcgcgtcgcgcgcgtggacctggacgaaaccaagattgatttcgag
ctggtcggggtggagagcaccgggcgcggcaaggccggaaaggcccccaagcagggccgt
cccgaggggaaacgcgcgcccaagtcctccgctaaaggttcgaggaaacgccggcgctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (49)   

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