KEGG   Sulfuricaulis limicola: SCL_2238
Entry
SCL_2238          CDS       T05241                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
slim  Sulfuricaulis limicola
Brite
KEGG Orthology (KO) [BR:slim00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:slim03016]
    SCL_2238
Enzymes [BR:slim01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     SCL_2238
Transfer RNA biogenesis [BR:slim03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    SCL_2238
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS DUF4865
Other DBs
NCBI-ProteinID: BAV34527
UniProt: A0A1B4XI95
Position
complement(2297792..2298355)
AA seq 187 aa
MTPVTTPLPATPTQRLFFALWPPAELSRELHRLAGNALRGGAGRRVAPENIHLTLAFLGS
VNASFRECAEQAATAIRATSFTLMLEQMGYWPKPGILWAGPNQTPSLLIQLVQELNAGLV
ACGYDAEKRPYAAHLTLARKTHLHNAVASMEPRAWEINRFHLVRSHTHAGGARYEILRSW
PLNSPAA
NT seq 564 nt   +upstreamnt  +downstreamnt
atgactcctgtcaccacaccgttgccagcaacgccgacacagcgactgttctttgcgctg
tggccgccggccgaattgagccgcgaacttcaccggctcgccggcaatgctttgcgcggc
ggcgccggccgacgcgtggcgccggagaatattcatctgacgctggccttcctgggttcg
gttaacgcgtcgttccgggaatgtgccgagcaggcggccaccgcgattcgcgccacatct
ttcacgctgatgcttgaacagatgggttattggccaaagcccggcatcctgtgggcgggt
ccgaatcagaccccatcgctattgatacagctggtgcaggagctgaatgccgggcttgtc
gcttgcggctatgatgcggagaagcgtccctacgcggcgcacctgacgctcgcacgcaag
acgcatctgcataacgccgttgcttccatggaaccccgcgcgtgggagataaaccggttc
catctggtgcgatcacatacacatgccggcggcgcgcgctacgaaattctgcgttcctgg
ccgctcaattcgccagcagcgtga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (23)   

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