KEGG   Shewanella loihica: Shew_0472
Entry
Shew_0472         CDS       T00489                                 
Name
(GenBank) chaperonin GroEL
  KO
K04077  chaperonin GroEL [EC:5.6.1.7]
Organism
slo  Shewanella loihica
Pathway
slo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:slo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Shew_0472
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:slo03019]
    Shew_0472
   03110 Chaperones and folding catalysts [BR:slo03110]
    Shew_0472
   03029 Mitochondrial biogenesis [BR:slo03029]
    Shew_0472
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:slo04147]
    Shew_0472
Enzymes [BR:slo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.1  Enzymes altering polypeptide conformation or assembly
    5.6.1.7  chaperonin ATPase
     Shew_0472
Messenger RNA biogenesis [BR:slo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Shew_0472
Chaperones and folding catalysts [BR:slo03110]
 Heat shock proteins
  HSP60 / Chaperonin
   Shew_0472
Mitochondrial biogenesis [BR:slo03029]
 Mitochondrial protein import machinery
  Matrix
   Other matrix factors
    Shew_0472
Exosome [BR:slo04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   Shew_0472
  Exosomal proteins of other body fluids (saliva and urine)
   Shew_0472
  Exosomal proteins of breast cancer cells
   Shew_0472
  Exosomal proteins of colorectal cancer cells
   Shew_0472
  Exosomal proteins of bladder cancer cells
   Shew_0472
SSDB
Motif
Pfam: Cpn60_TCP1
Other DBs
NCBI-ProteinID: ABO22344
UniProt: A3QA46
Position
529453..531102
AA seq 549 aa
MAAKEVLFGNDARVKMLAGVNVLANAVKVTLGPKGRNVVLDKSFGAPLITKDGVSVAKEI
ELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVTEGLKAVAAGMNPMDLKRGI
DKAVVAAVAELKTLSQECSDTKAIAQVGTISANSDESIGEIIATAMEKVGKEGVITVEEG
QALENELDVVEGMQFDRGYLSPYFINKPETGSVELENPYILLVDKKISNIRELLPILEGL
AKTGKPLMIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTV
IAEEIGLELEKATLEDLGTAKRVVITKDDTTIIDGTGEQEQISARVAQIKIQAEESTSDY
DREKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALI
RVASKIGELDVANEDQKHGVTIALRAMEAPLRQIATNAGEEASVVANNVKNGSGNYGYNA
GSDVYGDMLEMGILDPTKVTRSALQFASSIAGLMITTEAMVGDVPQEAGAGDMGGMGGGM
GGMGGMGMM
NT seq 1650 nt   +upstreamnt  +downstreamnt
atggcagctaaagaagttttatttggcaatgacgctcgcgtaaaaatgcttgcgggcgta
aacgtactggctaacgcagttaaagttactctaggccctaaaggccgtaacgtagttcta
gacaagagcttcggcgcgccgctgatcaccaaagacggtgtatcggtagctaaagagatc
gaactggaagataagttcgaaaacatgggcgcgcagatggtgaaagaagttgcttctaaa
gccaacgacgccgccggtgacggtaccactactgcaaccgtactggcacaagccatcgta
accgaaggcctgaaagccgttgccgctggcatgaacccaatggatcttaagcgcggtatc
gacaaggcggttgtagctgccgttgccgagctgaaaaccctgtctcaagagtgtagcgac
actaaggctatcgctcaggtaggtaccatctctgctaactctgacgagtcaatcggcgaa
atcatcgcaactgcgatggaaaaagttggtaaagaaggcgtgatcacagttgaagaaggt
caggccctagagaacgagctggacgtggttgaaggtatgcagttcgaccgtggttacctg
tctccatacttcatcaacaagccagaaaccggcagcgttgaacttgaaaacccatacatc
ctattggttgacaagaagatctctaacatccgtgagctactgcctatccttgaaggtctg
gcgaaaaccggtaagccactgatgatcatcgcagaagacgttgaaggcgaagccctggcg
actctggttgtgaacaacatgcgcggcatcgttaaagtggctgcggttaaggcacctggt
ttcggtgaccgtcgtaaggcgatgctacaagatatcgctatcctgactggcggtactgtg
attgccgaagagatcggtcttgagcttgaaaaagcgactctggaagacctaggtactgct
aagcgcgtggttatcaccaaagatgacactaccatcatcgacggtaccggcgagcaagag
cagatctctgcccgtgttgcccagatcaagatccaggcagaagagtctacttcagactac
gaccgtgaaaaactacaagagcgtatggctaagctggccggcggtgttgcagtgatcaaa
gtcggtgccgctaccgaagttgaaatgaaagagaagaaggctcgcgtagaagacgcgctg
cacgcgactcgcgccgccgttgaagaaggtgtggttgccggtggtggtgttgccctgatc
cgcgttgcttctaagattggtgagctggacgtggctaacgaagaccagaagcacggtgtg
actatcgcactgcgcgccatggaagcgcctctacgtcaaatcgcgaccaacgcaggtgaa
gaagcctcagttgtagcgaacaatgttaagaacggctctggtaactatggttacaacgcc
ggtagcgatgtgtatggtgacatgctagagatgggtattcttgacccaactaaggtgact
cgtagcgcgctacagttcgcttcatctatcgcaggtctgatgatcactaccgaagctatg
gtgggtgatgtaccgcaagaagctggtgctggcgatatgggcggcatgggcggcggtatg
ggtggtatgggcggcatgggcatgatgtaa

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Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (1)   
   Pfam (1)   
All databases (15)   

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