KEGG   Shewanella loihica: Shew_1264
Entry
Shew_1264         CDS       T00489                                 
Name
(GenBank) UvrD/REP helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
slo  Shewanella loihica
Pathway
slo03420  Nucleotide excision repair
slo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:slo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Shew_1264
   03430 Mismatch repair
    Shew_1264
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:slo03400]
    Shew_1264
Enzymes [BR:slo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Shew_1264
DNA repair and recombination proteins [BR:slo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Shew_1264
   MMR (mismatch excision repair)
    Other MMR factors
     Shew_1264
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 Viral_helicase1 AAA_30 AAA_22 ResIII AAA_11
Other DBs
NCBI-ProteinID: ABO23134
UniProt: A3QCD6
Position
1461981..1464017
AA seq 678 aa
MTKRLTWEQTRVVRHDAGHALIKAVPGSGKTTTLVKRVERLIKTGVEPGSILILMYNKSA
TVSFSDKLKLALKSDAIPEVRTFHSLALKIVALAERQQLTPKKMLITPGNYRYDELVKQA
YRVGCSYDSGYIEQSDITDFETFVSRCRASAVTPADAAADPTFSKIKPEFIRAYGCYCEL
LEANGLRTFEDSMIEAVSLLRIYPGLVARFKHIIVDEYQDVNLVQHEMIRLLTKPDTSVM
VVGDLNQCIYEWRGAQPDFMDGLFEQQFPNTTVFQLSCTFRFGHELSLIANSVIRRNSSK
LTRLCVSHPSTPKTEVKLHLDNCLSEVLSAIATENGSQAILSRSNARLTEVELVLRLCGR
TYRYLNGSSSLYSRSEIGLLVVGVLLCVYGDLRLIENHPCKREMLYGFLREAGIRWQKGQ
VKEALDALMTQVDVFSVLGRLFENSPHQRERLERLASVRNKDDDSVLASNVLQHLSLAGF
IEGVGSDSVRRTASNDRLRGVDRIEELLISNPIDARTFLNLILHPQDISADSEPITLATI
HGSKGLEWDHVILIGLNDCEFPGGKPDSGTQLPALTSESISNEELEVERRLFYVGITRAK
HQLHLVAPLDESLTWWLKKRWDSTPKKVPVATRFIYEAGLTACSLTSQSIYAGLLEQQTT
EFSKFHQWYLKDLQRLRV
NT seq 2037 nt   +upstreamnt  +downstreamnt
atgacaaaaagactgacgtgggaacaaacgcgtgttgttcgtcatgacgcgggacatgct
ttgattaaggctgtgccgggcagtggaaaaacgaccactctggttaagcgtgtagagcgg
ttgattaaaacaggagtagaaccaggttccattctaatcctgatgtacaacaaatcggca
actgtgagcttcagcgataagttaaagctggccttgaagtcggatgctattcccgaggta
cgtacatttcacagccttgccttgaagatagtggcattggcagagcgccaacaacttaca
cccaagaaaatgttaataacgccgggtaattatcgttatgacgagctggttaaacaggct
taccgtgtcgggtgcagttacgactctggttatattgaacagagtgatataacggatttt
gaaacatttgtttctcgatgccgtgcatccgctgtgacaccagccgatgcggccgcagat
cctacgttcagtaagatcaagccagagtttattcgggcatatggatgttactgtgagctg
ctggaagcgaatggcctgagaacattcgaagacagcatgattgaagctgtttctctgtta
aggatctatcccggccttgtagcccgattcaaacacatcatcgtagatgaataccaggac
gtcaatctcgtacagcatgagatgatccgcttactcaccaaacctgacacatcggtgatg
gtagtcggggatctcaatcagtgcatttacgaatggcggggggcgcagcctgactttatg
gacggtttgtttgagcaacaatttcccaataccactgtgtttcagctttcgtgtacattc
cgatttggtcatgaactttcgctgattgctaattctgttattcggcgtaactctagcaag
ttgaccaggttgtgcgtaagccatccatctacgcctaaaacagaagtcaagctgcatttg
gataactgtttatccgaggtgttatcagcaatagctactgagaatggttcacaagcgata
ctctcccgttcaaatgcaagattgactgaggttgagttggtattacgcctgtgtgggcgc
acatatcgctatctgaacggttcatcgtctctctatagccgctctgaaatagggttacta
gtggtaggtgtgctgctatgtgtttatggcgacctaagactaatagagaatcacccgtgt
aaacgggaaatgctctacgggtttctgagggaggccggaatccgatggcagaaaggtcag
gttaaagaggctcttgatgccctgatgacacaggtggatgtgttttcggtattagggaga
ctattcgagaattccccacatcagagggaacgcctggagcgactcgcctcggttcgcaat
aaagacgatgatagcgtgctggcgtcgaatgtattacagcacttgagtctggcaggattt
attgaaggtgtcggctcggatagcgtgagacgcactgcatcaaatgatcgtctgcggggt
gttgatcggattgaagagctactgatatcaaatccaattgatgctcgaacatttttgaat
cttattctgcatccgcaagacatatccgcagacagtgagcctatcacgcttgctaccata
catggttctaagggccttgagtgggaccacgtcatattgattgggcttaatgattgcgaa
tttcctggaggtaagcctgatagtggcactcaattacctgcgctaacgtctgaatcgatt
tctaacgaagaactagaagtggagcggcggttgttttacgtagggattactcgtgcaaag
caccaattgcatttggttgcgccactagatgaaagcctcacttggtggcttaaaaaacgc
tgggatagcactccgaaaaaggtgcctgtagcgactcgattcatctatgaagcagggtta
actgcttgttctctaacgagccaatccatttatgccggattgttagaacagcaaacgact
gaatttagcaagtttcaccaatggtatctgaaggatcttcaaaggctaagagtttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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