KEGG   Syntrophothermus lipocalidus: Slip_1509
Entry
Slip_1509         CDS       T01253                                 
Name
(GenBank) ATP dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
slp  Syntrophothermus lipocalidus
Pathway
slp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:slp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Slip_1509
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:slp03400]
    Slip_1509
Enzymes [BR:slp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Slip_1509
DNA repair and recombination proteins [BR:slp03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Slip_1509
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme RNA_ligase
Other DBs
NCBI-ProteinID: ADI02272
UniProt: D7CNI7
Position
complement(1566306..1567244)
AA seq 312 aa
MVMPVIKPGTPFIPMEPVFHPEAFDDENYGFQIKWDGTRIIAHLDGPVELFNRKMKKRTA
QYPEVADALKEALRGTSAVLDGEIVTLSGDKPNFHQLMRRDRATDARTINHLATRIPVTY
VVFDILYLKDKCLADLPFWQRDGILRSTLKSSDPVVVTDTFKGRGKALFAIVREKGLEGI
VAKRLESTYQIGKKSAKWLKIKNRQRTTALVGGFVAEGKQVRSLFLGQLVEGDLIYIGRA
SSGLDEETGRALYDFLSRRAENTCPFVNPPAVERRENLVWVLPSASVEVEFYDYTEKGYL
RHPVIKRVELGL
NT seq 939 nt   +upstreamnt  +downstreamnt
atggtgatgcctgtgataaagccgggaacccccttcattcccatggaaccggtcttccac
ccggaggcctttgacgatgaaaactacggttttcagataaagtgggacggaacaaggata
atagcccacctggacgggccggtggaacttttcaaccggaagatgaaaaagcgcaccgcc
cagtatcccgaagtggccgatgcgttgaaggaggcccttaggggcacaagcgccgtgctg
gacggggaaatcgtaaccctttccggcgataagcccaatttccaccagctgatgaggcgt
gaccgggccaccgacgcgcgcaccataaaccacctggccaccagaataccggtgacctat
gtggtctttgacatcctgtacctaaaagataagtgcctggcggaccttcccttttggcag
cgggacgggatattgagatccaccttaaaatcttcggacccggtggtggtaaccgatacc
ttcaagggacgtgggaaggccctttttgcaatcgtcagggaaaagggtctggagggcata
gtggccaaaagactggaaagtacctaccagatcggaaagaaaagtgcaaaatggcttaaa
attaaaaaccgccagcggaccaccgccctggtgggggggtttgtagcagaagggaagcag
gtgcggtccctctttctcggccagcttgtggaaggggacttaatctatataggccgggct
tccagcggcctcgatgaggaaacgggcagggctctttacgactttctatcccggagggcc
gaaaatacctgtcccttcgtcaatccgcccgccgtggaaagaagggaaaatctcgtatgg
gtactaccgtcagcttccgttgaagtggaattttacgactacacggagaaaggttatctc
agacacccggtcatcaagcgggtggaactggggttatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (26)   

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