KEGG   Streptomyces lincolnensis: SLINC_0172
Entry
SLINC_0172        CDS       T04801                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
sls  Streptomyces lincolnensis
Pathway
sls03030  DNA replication
sls03410  Base excision repair
sls03420  Nucleotide excision repair
sls03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sls00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SLINC_0172
   03410 Base excision repair
    SLINC_0172
   03420 Nucleotide excision repair
    SLINC_0172
   03430 Mismatch repair
    SLINC_0172
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sls03032]
    SLINC_0172
   03400 DNA repair and recombination proteins [BR:sls03400]
    SLINC_0172
Enzymes [BR:sls01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SLINC_0172
DNA replication proteins [BR:sls03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SLINC_0172
DNA repair and recombination proteins [BR:sls03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SLINC_0172
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SLINC_0172
   MMR (mismatch excision repair)
    DNA ligase
     SLINC_0172
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SLINC_0172
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT PTCB-BRCT HHH HHH_3
Other DBs
NCBI-ProteinID: ANS62396
UniProt: A0A1B1M189
Position
222046..224157
AA seq 703 aa
MVAGRMTGMTTPTAQIVDAAAYAQAVEDAVKAAAAYYAGGTSPLDDDAYDQLVRGIAAWE
AGHPKGVLPDSPTGKVAGGAVQGDVPHTVAMLSLDNVFSPEELTAWTLSLARRVGHEVAR
FSVEPKLDGLAIAARYTHGRLRQLITRGDGTAGEDVSHAIGTIEGLPSHLAEPVTVEVRG
EILMTTAQFEHANEVRTGHGGQPFANPRGAAAGSLRAKDRAYTVPMTFFGYGLLPLADTE
TALAARLGELAHSELMVQAAAYGVNTTATTAVPGIVADTVEQVLARVQEMAALRAQLPFG
IDGVVIKADLAADQQAAGSGTRAPRWAIAYKLAAVEKITRLLAVEWNVGRTGIIAPRAVL
EPVTIDGSTITYATLHNPADITRRGLLLGDHVLVHRAGDVIPRIEAPVAHLRTGDEQPIV
FPEACPRCGAGIDTSEQRWRCENGRNCHLVAALSYAAGRDQLDIEGLGHTRVVQLVDAGL
VTDLADLFTLTHEQLLGLERMGETSTDNLIAAIAAARNQPLSRVLCALGVRGTGRSMSRR
IARHFATMDNIRAADAEAMQQVEGIGAEKAPSIVAELAGLAPLIDKLTAAGVNMSEPGAT
PPSPADSEADDPSAAATPAGGGPLSGMTVVVTGAMTGILEQLSRNQMNELIERAGGRSSS
SVSRKTSLVVAGEGAGSKRAKAEDLGIRLATSDEFAALIADFL
NT seq 2112 nt   +upstreamnt  +downstreamnt
gtggtggcaggcaggatgacgggcatgaccacaccaactgctcagatcgtggatgccgcc
gcctatgcgcaggcggtcgaggatgcggtgaaggccgcggccgcctactacgcgggcggc
acctcgccgttggacgacgacgcctacgaccagttggtgcggggcatcgccgcgtgggag
gccggccaccccaaaggggtgctgcccgattcgccgaccgggaaggtggccggtggcgcc
gtccagggcgacgtgccgcacaccgtggcgatgctgagcctggacaacgtgttctccccg
gaagagctcaccgcctggaccctttcgctggcccgccgggtcggccacgaagtggcgcgg
ttcagcgtcgagccgaagctggacggcctcgcgatcgccgcccgctacacccacggccgc
ctgagacagctgatcacccgcggtgacgggacagccggggaggacgtcagccacgcgatc
ggcaccatcgagggcctgcccagccacctggccgagccggtcaccgtggaggtacgcgga
gagatcctgatgaccacggcccagttcgagcacgccaacgaggtgcgcaccgggcacggc
ggtcagccgttcgcaaacccgcgcggcgccgcagcgggcagcctgcgggccaaggaccgc
gcttacacggtgccgatgacgttcttcggctacggcctgctgccccttgccgataccgag
acggcgctcgccgcccggctgggcgagctcgcgcacagcgagctgatggtgcaggcggcc
gcgtacggggtgaacaccaccgccaccacggcagtgcccggcatcgtcgccgacacagtg
gagcaggtcctggcccgggtgcaggagatggccgcgctgcgtgcgcagttgcccttcggt
atcgacggggtcgtcatcaaggccgacctggccgccgaccagcaggcggccggatccggg
acgcgggccccgcgctgggcgatcgcctacaagctggcggccgtggaaaagatcacccgg
ctgcttgcggtggagtggaacgtcggccgcaccggcatcatcgccccgcgcgcggtgctg
gaaccggtcaccatcgacggctccaccatcacctacgccaccctgcacaaccccgccgac
atcactcgccgcggcctgctcctgggcgaccacgtcctggtccaccgggccggcgacgtc
atcccccgcatcgaagcccccgtcgcccacctgcgcaccggcgacgaacagcccatcgtc
ttccccgaggcgtgcccgcgctgcggggccggcatcgacaccagcgaacagcgctggcgc
tgtgagaacggccgtaactgccatctggtggccgccctgtcctacgccgccggccgggac
cagctcgacatcgaaggcctcggccacactcgcgtcgtccagctcgtcgacgccggcctg
gtcaccgacctcgccgacctgttcaccctcacccacgagcagctcctggggctggagcgg
atgggcgaaaccagcaccgacaacctcatcgccgcgatcgccgcagccaggaatcagccg
ctgtcacgggtgctgtgcgcgcttggcgtgcgcggcacgggccgctccatgtcccgccgc
atcgcccgccacttcgccaccatggacaacatccgtgctgccgacgccgaagcgatgcag
caggtcgagggcatcggcgccgagaaggccccgtccatcgtcgccgagctcgccggcctc
gccccgctcatcgacaaactgaccgcggccggagtgaacatgagcgaacccggcgccact
ccgcccagcccggcggacagcgaggcagacgacccttctgcggccgcgacccctgccggc
ggcggcccgctgtcggggatgacagtggtcgtcaccggcgcgatgaccggcatcctggag
cagctcagccgcaaccagatgaacgaactcatcgaacgcgccggcggccgctcctcctcc
agcgtctccaggaagaccagcctggtcgtcgccggcgagggcgcgggatccaagcgcgcc
aaggccgaagatctcggcatccgtctggccacctcggacgaattcgccgccctcatcgcc
gacttcctctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

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