KEGG   Sideroxydans lithotrophicus: Slit_0760
Entry
Slit_0760         CDS       T01196                                 
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
slt  Sideroxydans lithotrophicus
Pathway
slt03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:slt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Slit_0760
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:slt03021]
    Slit_0760
   03400 DNA repair and recombination proteins [BR:slt03400]
    Slit_0760
Enzymes [BR:slt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Slit_0760
Transcription machinery [BR:slt03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Slit_0760
DNA repair and recombination proteins [BR:slt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Slit_0760
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45
Other DBs
NCBI-ProteinID: ADE10999
UniProt: D5CP58
Position
757868..761938
AA seq 1356 aa
MSYSFTEKKRIRKSFAKRVGALPVPFLLSTQLESYSDFLQAWVAPEQRKNEGLQAAFNSI
FPIESHTKFARLDFVSYTLGMPPFDVRECQQRGLTYASPLRARVRLTILDKEASKPTVKE
VKEQEVYMGEIPLMTNTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDAKDYVYFRIDRRRKMPVTILLKSLGYTPEQILQMFFQFDTFHFGKKG
IQFEVVPERLRGEIARFDIEGKGGKLIVAKDKRITVRHIREMQEAGIDKLTVGTDFLVGR
VLAHNIVDKDSGEIIANANDEITETLLDKLEAAGIAKINTLYTNDLDQGGFISQTLRTDE
TTDQWTARVAIYRMMRPGEPPTEDAVEALFNGLFFNEDRYDLSAVGRMKFNRRVGREELT
GAVTLSNEDIVEVIRILVELRNGRGEIDDIDHLGNRRVRAVGELAENQFRTGLARVERAV
KERLGQAEADNLMPHDLINAKPISAAVKEFFGSSQLSQFMDQTNPLAEVTHKRRISALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARTNEYGFIETPYRRVV
KSRATDDVDYLSAIEEGKFTIAQANAELDKKGHFTNDIVSARQHNEFVLAEPDKLEYMDV
APAQVVSVAASLIPFLEHDDANRALMGANMQRQAVPVLRAEKALVGTGIERTVAVDSGTA
VQAWRGGRVDYVDSGRIVVRVNDDETTAGEVGVDIYNLTKYTRSNQNTNINQRPLVRVGD
VIARGDVVADGASTDMGELALGQNMMIAFMPWNGYNFEDSILISERVVAEDRFTSIHIEE
LTVMARDTKLGTEEITRDIPNLSEAQMARLDECGIVHIGAEVGVGDVLVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVKAGISGTVIDVQVFTREGLQRDKRAQQIIDDELSR
YKKDLADQMRIVEADLFARLEKLLHNKVANGGPKKLAKGTKLNKEYLHSIEHHQWFDIRV
ADDEVAAQMEQVKEALAQKRVEFDAAFELKKKKLTQGDELQAGVQKMVKVYVAVKRRLQP
GDKMAGRHGNKGVVSRIVPVEDMPRMADGTPVEVVLNPLGVPSRMNIGQVLEVHLGWAAK
GLGKKINQMLEAEAKIADVRKFLGKIYKGDQADEIATFTDEEVVELCRNLKAGVPFATPV
FDGASEEEIKDLLELADLPRSGQIQLYDGRTGDAFDRKVTVGYMHVLKLHHLVDDKMHAR
STGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKVYE
NIVKGDHKIDAGMPESFNVLTKEIRSLGIDIDLERH
NT seq 4071 nt   +upstreamnt  +downstreamnt
atgagctattcttttaccgaaaaaaaacgtattcgtaaaagttttgcgaagcgcgtcggc
gctttgccggtgccgtttttgttgtccacccagttggaatcctacagcgatttcctgcag
gcgtgggtcgcacccgaacaacgcaagaacgaaggcctgcaagccgccttcaattccatc
ttcccgatcgagagccacaccaagttcgcgcgcctggacttcgtcagctatacgctgggt
atgccgccgttcgatgtgcgtgaatgccagcaacgcggtttgacctatgcttcgccgttg
cgtgctcgtgtgcgcctgaccattctggacaaggaagcctccaagccgaccgtgaaggag
gtgaaggagcaggaagtctatatgggcgagatcccgttgatgaccaataccggctcgttc
gtgatcaacggcaccgagcgcgtgatcgtctcgcagttgcaccgttctcccggcgtgttc
ttcgagcatgaccgcggcaagacccactcttccggcaagctgctgttctccgcgcgcgtg
attccctaccgtggttcgtggctggacttcgagttcgacgccaaggattacgtctacttc
cgtatcgaccgccgccgcaagatgccggtgacgatcctgctgaagtcgctgggctataca
ccggaacagatcctgcagatgttcttccagttcgataccttccatttcggtaagaagggc
atccagttcgaggtggtgccagagcgcttgcgcggcgagattgcgcgcttcgatatcgaa
ggcaagggcggcaagctcatcgtcgccaaggataagcgcatcaccgtgcgccatatccgc
gagatgcaggaggccggcatcgacaagctgaccgtgggtacggattttctggttggccgg
gtattggcgcacaacatcgtggacaaggacagcggcgagatcatcgccaatgccaacgac
gagatcaccgagactttgctggacaagctggaagctgcgggtatcgccaagatcaatacg
ctgtacaccaacgacttggaccagggcggtttcatttcgcagaccttgcgtaccgacgag
acgactgaccagtggacggcgcgcgtggctatctaccgcatgatgcgtcccggcgagccg
cccaccgaagatgcagtggaggcgttgttcaacggcttgttcttcaacgaagatcgctat
gacctgtcggcagtcggtcgcatgaagttcaatcgccgcgtgggtcgcgaggagttgact
ggtgctgtcactctgtccaacgaagacatcgtggaagtgatccgcatcctggtcgagttg
cgcaacggtcgcggcgagatcgacgacatcgaccacctgggtaaccgccgcgtgcgcgcc
gtgggcgaattggccgagaaccagttccgtaccggtctggctcgtgtcgagcgcgccgtc
aaggagcgtctgggccaggccgaagccgacaacctgatgccgcacgacctgatcaacgcc
aagccgatctccgctgcagtcaaggagttcttcggttcgtcgcaactgtcgcagttcatg
gaccagaccaacccgctggcggaagtgacgcacaagcgtcgtatttctgcgctgggaccg
ggcggtctgacccgtgagcgcgccggcttcgaagtgcgcgacgtgcacccgacccactat
ggccgcgtgtgcccgatcgagacaccggaaggtccgaacatcggcctgatcaactcgctg
gcgctgtatgcgcgcaccaacgaatacggcttcatcgagacgccgtatcgccgcgtagtg
aagagccgcgccactgacgacgtggactacctgtctgcgatcgaagaaggcaagttcacc
atcgcgcaggcgaatgccgaactggacaagaagggccacttcaccaacgacatcgtgtct
gcacgtcaacacaacgagttcgtgctggccgagccggacaagctggaatacatggacgtg
gcgccggcacaggtggtgtccgtggctgcttcgctgattccgttcctggagcacgatgac
gcgaaccgtgccttgatgggcgccaacatgcaacgccaggcagtgcctgtgctgcgtgcc
gagaaggcattggtcggtaccggtatcgagcgcaccgtggcggtcgactccggtacggct
gtacaagcctggcgcggcggtcgcgtggactatgtggattccggccgtatcgtggtgcgc
gtcaacgacgacgaaaccaccgcgggcgaagtcggcgtggacatctacaacctgaccaag
tacacccgttccaaccagaacaccaacatcaaccagcgtccgctggtgcgcgtgggcgat
gtgatcgcccgcggcgacgtggtggctgacggagcttcgactgacatgggcgaattggcg
ctgggtcagaacatgatgatcgcattcatgccgtggaacggctacaacttcgaggactcg
atcctgatttccgagcgcgtggtcgcggaagaccgtttcacttcgatccatatcgaagag
ttgacggtgatggctcgcgacaccaagctgggcaccgaagaaattacccgcgacatcccg
aacctgtcggaagcgcagatggcgcgtctggacgagtgcggcatcgtgcatatcggcgcc
gaagtcggcgtgggtgacgtgctggtgggcaaggttacccccaagggcgagacgcaactg
acgccggaagagaaactgctgcgcgcgatcttcggcgagaaggcttccgatgtgaaggac
accagcttgcgcgtgaaggccggcatctccggtaccgtcatcgacgtgcaagtgttcacc
cgcgaaggcttgcaacgcgacaagcgcgcgcaacagatcatcgacgatgaactgtcgcgc
tacaagaaagacctggccgaccagatgcgtatcgtcgaggctgacttgtttgcccgtctg
gagaagttgctgcacaacaaggtcgccaatggcggtccgaagaaactggccaagggtacc
aagctgaacaaggaatacctgcacagcatcgagcaccaccagtggttcgatatccgcgtt
gccgacgatgaggtggctgcgcagatggagcaagtcaaggaagcgctggcacagaagcgt
gtggaattcgatgcggcgttcgaactgaagaaaaagaaactgacccagggcgacgagttg
caagccggcgtgcagaagatggtcaaggtgtatgtggcggttaaacgccgcctgcagccc
ggcgacaagatggcgggtcgccacggaaacaagggtgtggtgtcacgcatcgtgccggtg
gaagacatgccgcgcatggccgacggtacgccggtggaagtggtgctgaacccgctgggc
gtgccgtcgcgtatgaacatcggacaggtgctggaagtgcacttgggctgggcggccaag
gggctgggcaagaagatcaaccagatgctggaagctgaggccaagatcgccgatgtgcgc
aaattcctcggcaagatatacaagggcgaccaggccgacgagatcgcgactttcaccgac
gaggaggttgtcgagttgtgccgcaacctgaaggccggtgtgccattcgcgacccccgtg
ttcgacggagccagcgaagaagagatcaaggatctgctggagctggccgatctgccgcgt
tccggccagatccagctgtacgacggacgcaccggcgatgccttcgatcgcaaggttacc
gtgggttacatgcatgtgctgaaactgcaccacctggtcgacgacaagatgcacgcgcgt
tccactggtccttacagcctggtcacgcagcagcctctgggcggcaaggcgcagttcggt
ggtcaacgtttcggtgagatggaagtctgggcgctggaggcatacggtgcggcatacacg
ctacaggagatgctcacggtcaagtcagatgacgtcaacggacgtaccaaggtgtacgag
aacatcgtcaagggcgatcacaagatcgatgccggcatgccggagtcgttcaacgtgctc
accaaggaaatccgctctttgggtatcgatatcgatctggaacggcactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (28)   

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