KEGG   Streptococcus lutetiensis: KE3_1534
Entry
KE3_1534          CDS       T02775                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
slu  Streptococcus lutetiensis
Pathway
slu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:slu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KE3_1534
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:slu03019]
    KE3_1534
   03016 Transfer RNA biogenesis [BR:slu03016]
    KE3_1534
Enzymes [BR:slu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     KE3_1534
Messenger RNA biogenesis [BR:slu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     KE3_1534
Transfer RNA biogenesis [BR:slu03016]
 Prokaryotic type
  tRNA degradation factors
   KE3_1534
SSDB
Motif
Pfam: RNB OB_RNB CSD2 S1 RNase_II_C_S1 HTH_DeoR
Other DBs
NCBI-ProteinID: AGS06005
UniProt: S5R5W0
Position
complement(1487724..1490069)
AA seq 781 aa
MNENIIAYLKEHGKVNINDLAAGLDMTGAEKFPLLVKEISQLESQGELRFDDSGSLALRK
KVEKKKEITVTGVFRANKAGFGFLSVDEDEDDMFVGRNDVGHAVDGDTVEAVIKKPANRL
KDTAAEVRIVGIVERSLKTVVGKFILDDEKPKYAGYIKSKNQKIQQEIYIKKEPVVLDGT
EIIKVDIDKYPTRGHDYFVGHVRDIVGHQGDVGIDVLEVLESMDIKSEFPEDVMAEANAV
PDVLSEKDLIGRVDLRNEITFTIDGADAKDLDDAVHIKLLDNGNFELGVHIADVSYYVTE
GSALNREAVARGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSCLMEIDRNGHVVNH
QICQSVIKTTFRMTYSDVNDIIAGDEELIEKYQPIVESIHHMAALHNILEKMRVRRGALN
FDTSEAKIIVNDKGMPVDIVIRERGIAERMIESFMLAANETVAEHFAKRKLPFIYRIHED
PKAEKLQKFLDYASVFGVQIHGTANKISQQALQDFMAKVEGKPGAEVLNMMLLRSMQQAR
YSEHNHGHYGLAAEYYTHFTSPIRRYPDLLVHRMIREYTQVTDEKIEHFRNVIPELATSS
STLERRAIDAERVVEAMKKAEYMEEYVGQEFDGVVASVVKFGMFIELPNTIEGLVHITTL
PEFHNYNERTLTLQGEKSGKVFRVGQQIKIKLTRADKETGDIDFEYIPSDYDVIEKVKKS
RQDRSGKDKRRPKSDNHKDHKKDHKSNKQRNHKSSKSSSKKTGKKPFYKEVAKKKTRKAK
K
NT seq 2346 nt   +upstreamnt  +downstreamnt
atgaatgaaaatattattgcttatttaaaagagcacggaaaagttaatattaacgattta
gcggctggtttggatatgactggtgctgaaaaatttccattgcttgttaaagaaatttca
cagttagaaagtcagggtgaactccgctttgatgatagcggtagccttgcccttcgtaaa
aaagtagagaaaaaaaaagaaattacggtcactggtgtctttcgtgctaacaaagctggt
tttggtttcttgtctgttgatgaggatgaagatgacatgtttgttgggcgtaatgacgtt
ggtcatgctgtagatggtgatacggttgaagctgtgattaagaaacctgctaaccgtctt
aaagatacagcggctgaagtccgtattgtcggaatcgtcgaacgcagtctaaaaactgtc
gttgggaaatttatcctagacgatgaaaaaccaaaatatgctggttacatcaagtctaaa
aatcaaaaaatccaacaagaaatctacatcaaaaaagaacctgttgttttagacggaact
gaaatcatcaaggttgatatcgataaatacccaacgcgtggtcacgattactttgtcggt
catgttcgtgatatcgttggtcaccaaggggatgttggaattgatgttcttgaagtcctt
gaatcaatggacatcaaatcagaatttccagaagacgttatggctgaagctaatgctgtt
ccagatgtgctgtctgaaaaagatttgattggtcgcgtggatttacgtaatgaaatcacc
tttaccattgacggcgctgatgccaaagacttggatgatgcggttcatatcaaactttta
gataacggtaactttgagttaggtgttcacatcgctgacgtgtcttattatgttacagaa
ggttctgcccttaaccgtgaagcggtagctcgtggaacatctgtgtatgtgactgaccgt
gtggtgccaatgttgccggaacgcttatcaaacggtatctgttcattaaatccaaatgtg
gatcgtttgacacaatcatgtttgatggaaattgatcgtaatggtcacgtggtgaatcac
caaatctgtcaatcagttattaaaacaactttccgtatgacttacagcgatgttaatgat
atcattgctggcgatgaagagttgattgaaaaataccaaccaatcgttgagtcaattcac
cacatggctgctcttcataatatcttagagaagatgcgcgtgcgtcgtggggcacttaat
tttgatactagcgaagctaaaatcatcgtcaatgacaaaggaatgccagttgacatcgtg
attcgtgagcgtggtattgcagagcgcatgattgaatccttcatgttggcagctaacgaa
acagtggcagaacactttgcaaaacgcaaattgccatttatctaccgtatccacgaagat
cctaaagctgaaaaattacaaaaattccttgattatgcaagcgtttttggcgtgcaaatt
cacgggacagctaataaaattagccagcaagctcttcaagatttcatggcaaaagttgaa
ggaaaaccaggtgctgaagttttgaatatgatgcttcttcgttcaatgcaacaagcacgc
tattctgaacacaatcatggacactatggtttggctgctgagtactacacacactttaca
agcccaattcgtcgttatcctgaccttcttgttcaccgtatgattcgtgaatacacacaa
gtgacagatgagaagattgaacacttcagaaatgtgattccagaattggcaacatcatct
tcaactctcgaacgtcgtgctattgatgccgaacgtgtggttgaagcgatgaaaaaagct
gaatacatggaagaatacgttggtcaagaatttgacggtgtggtggctagtgtcgtgaaa
tttggtatgtttatcgaattgccaaataccattgaaggtcttgttcacatcacaacctta
ccagaattccataattacaacgaacgtactttgacccttcaaggtgaaaaatcaggtaaa
gtcttccgcgttggtcaacaaattaagattaaattaacacgtgccgacaaagaaactggt
gatattgactttgagtacattccaagcgattatgatgtgattgaaaaagtgaagaaatca
cgtcaagaccgttctggaaaagacaaacgtcgtccaaaatctgacaatcacaaagaccat
aaaaaagaccacaaatcaaataaacaacgcaatcataaatcttcaaaatcatcttctaaa
aaaacaggcaagaaacctttctacaaagaagtagctaagaaaaaaactcgtaaagctaaa
aaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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