KEGG   Streptomyces lividans: SLIV_16705
Entry
SLIV_16705        CDS       T03222                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
slv  Streptomyces lividans
Brite
KEGG Orthology (KO) [BR:slv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:slv03016]
    SLIV_16705
Enzymes [BR:slv01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     SLIV_16705
Transfer RNA biogenesis [BR:slv03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    SLIV_16705
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS
Other DBs
NCBI-ProteinID: AIJ14317
Position
complement(3740600..3741172)
AA seq 190 aa
MRLFAAVLPPEDVTAALAAEVAVLRGLPGADGLRWTGRPGWHLTLAFYGEVDDELVPELS
ARLARAAHRTAPFELALRGGGQFGRGRALWAGAEGGLATLRLLAGRAEAAGRRAGVATGE
HRRYQPHLTLARSRQACDVRPYVEALAGFTGPTWTVTDLALVRSHLPESGVPGEQPRYEA
VARSPLGSSG
NT seq 573 nt   +upstreamnt  +downstreamnt
atgagactgttcgccgccgtactgccgcccgaggacgtcaccgccgccctcgccgcggag
gtggccgtgctgcggggcctgcccggcgccgacgggctgcgctggaccggccgaccgggc
tggcacctcaccctcgccttctacggcgaggtcgacgacgaactcgtccccgagctgtcg
gcccgcctggcgcgcgcggcccaccgcaccgcgcccttcgaactggcgctgcgcggcggt
ggccagttcggccgcggccgggcgctgtgggcgggtgcggagggcggcctggcgaccctg
cggctgctggccggccgcgccgaggccgcggggcgcagggcgggcgtcgcgacgggcgag
caccgccgctaccagccccacctgaccctggcccgcagcagacaggcgtgcgacgtccgc
ccctacgtcgaggcgctggccggcttcaccggccccacctggaccgtgaccgacctggcg
ctggtccgcagccatctgccggagtcgggcgtgcccggcgagcagcctcgttacgaggcg
gtcgcgcgcagcccgctcggctcctccggttag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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