KEGG T03222: SLIV

Streptomyces lividans: SLIV_33340

Entry

SLIV_33340        CDS       T03222

Name

(GenBank) excinuclease ABC subunit A

K03701

excinuclease ABC subunit A

Organism

slv Streptomyces lividans

Pathway

slv03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:slv00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SLIV_33340
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:slv03400]
    SLIV_33340
DNA repair and recombination proteins [BR:slv03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SLIV_33340
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      SLIV_33340

SSDB

Motif

Pfam:

UvrA_DNA-bind ABC_tran AAA_29 AAA_21 AAA_16 DnaJ_CXXCXGXG AAA_33 nSTAND1 AAA_18 AAA_22 NTPase_1 ATP_bind_1

Other DBs

NCBI-ProteinID:

AIJ17552

Position

complement(7407614..7409959)

AA seq 781 aa
MHSPHDPYVRVRDAREHNLKGVDVDVPRDVLAVFTGVSGSGKSSLAFGTVYAEAQRRYFE
SVAPYARRLIHQVGAPKVGGITGLPPAVSLQQRRATPTSRSSVGTVTNLSNSLRMLFSRA
GTYPPGAERLDSDAFSPNTAAGACPECHGLGRVHRTTEELLVPDPSLSIRDGAIAAWPGA
WQGKNLRDVLDALGYDVDRPWRELPAEAREWILFTDEQPVVTVHPVREAGRIQRPYQGTY
MSARRYVLKTFADSKSATLRAKAERFLTSAPCPVCGGGRLRAEALAVTVGGRTVAELAAL
PLAELPCLLPTEGEAAKVLAEDLISRIAPVVELGLGYLSLDRPTPTLSAGELQRLRLATQ
LRSGLFGVVYVLDEPSAGLHPADTEALLTVLERLKAAGNSVFVVEHHLGVMRGADWIVDV
GPLAGEHGGRVLYSGPVDGLARVAESATARHLFDRSPAPVREVRTPRGAVTVGPVTRHNL
RGVTVRVPLGVLTAVTGVSGSGKSTLVGEITEDLPGVGRLVSVDQRPIGRTPRSNLATYT
GLFDVVRKVFAATDRARERGFGVGRFSFNVPGGRCETCQGEGFVSVGLLFLPSTYAPCPD
CGGARYNPETLEVAYRGRNIAEVLDLTVEGAAQFFTDTPAVARSLAALLDVGLGYLRLGQ
PATELSGGEAQRIKLASELQRGRRGHTLYLLDEPTTGLHPADVEVLMRQLHGLVDAGHTV
VVVEHDMSVVAGADHVIDLGPGGGDAGGRIVAEGTPARVAGAAGSATAPYLARALDGGER
R

NT seq 2346 nt +upstreamnt +downstreamnt
atgcacagcccccacgacccgtacgtccgcgtgcgcgacgcccgcgagcacaatctcaag
ggcgtcgacgtggacgtcccccgggacgtgctggcggtgttcacgggcgtctccggatcg
gggaagtcgtcgctggccttcgggacggtctacgcggaggcgcagcggcgctacttcgag
tcggtcgcgccctacgcccggcggctgatccaccaggtcggcgcacccaaggtcggcggg
atcaccgggctgccgcccgccgtctcgctccagcagcggcgggccacgccgacgtcccgc
tcctcggtggggacggtcaccaacctctccaactccctgcggatgctcttctcccgcgcc
ggcacgtacccgccgggcgccgagcggctggactccgacgcgttctcgccgaacacggcg
gcgggggcctgcccggagtgtcacgggctcggccgggtgcaccgcaccaccgaggagttg
ctggtcccggatccctcgctgtcgatccgggacggtgcgatcgccgcgtggccgggcgcc
tggcagggcaagaacctgcgggacgtcctggacgcgctcgggtacgacgtggaccggccc
tggcgcgagctgcccgccgaagcgcgggagtggatcctgttcaccgacgagcagccggtg
gtcacggtccacccggtgcgggaggcgggccgcatccagcggccttaccagggcacgtac
atgagcgcccggcgctacgtgctgaagacgttcgcggactcgaagagcgccacgctgcgg
gcgaaggcggagcgcttcctgaccagcgcgccctgcccggtgtgcggcggcggcaggctg
cgggccgaggcgctcgcggtgaccgtcggcggccgcaccgtcgccgagctggccgcgctg
ccgctcgccgagctgccctgcctgctgccgaccgagggcgaggcggccaaggtgctggcc
gaggacctcatctcccggatcgcgcccgtcgtggagctggggctcggctatctgagcctg
gaccggcccacccccaccctgtcggcgggcgagttgcagcggctgcggctggcgacccag
ctgcgctccggcctgttcggcgtcgtgtacgtcctcgacgagccctcggcgggactgcac
ccggcggacacggaggcgctcctgacggtgctcgaacggctgaaggcggccggcaactcg
gtgttcgtggtggagcaccacctcggtgtgatgcgcggcgccgactggatcgtggacgtc
ggtccgctggccggggagcacggcgggcgggtgctgtacagcggcccggtcgacggactg
gcccgcgtcgcggagtccgccaccgcccgtcatctcttcgaccgctcccccgcgcccgtg
cgcgaggtacgcaccccgcggggcgcggtgacggtcggtccggtcacccggcacaacctg
cgcggggtgaccgtgcgggtccccctcggggtgctcaccgcggtgacgggcgtgtccggc
tccggcaagtcgacgctggtcggcgagatcaccgaggacctgccgggggtgggccggctg
gtctccgtcgaccagcgccccatcggccgcaccccgcgttccaacctggccacctacacc
ggcctgttcgacgtcgtacgcaaggtcttcgccgccaccgaccgggcgcgggagcgcggt
ttcggcgtgggccggttctccttcaacgtcccgggaggtcgctgcgagacctgccagggc
gagggtttcgtcagcgtcgggctgctgttcctgccgagcacgtacgcgccgtgccccgac
tgcggcggagcgcgctacaaccccgagacgctggaagtcgcgtaccgggggcggaacatc
gccgaggtgctggacctgacggtggagggcgcggcgcagttcttcacggacactccggcg
gtggcccgcagcctggccgcgctgctggacgtcggtctcggctatctgcggctcggccag
ccggcgacggagctgtccggcggggaggcgcagcgcatcaagctcgcgagcgagcttcag
cggggacgccgcgggcacaccctgtacctcctcgacgagccgaccaccggtctgcacccg
gccgatgtcgaggtgctgatgcgccagttgcacggtctcgtcgacgccgggcacacggtc
gtcgtggtcgagcacgacatgagtgtggtcgcgggcgccgaccacgtgatcgacctgggt
ccgggcggcggcgacgcgggcggccggatcgtcgccgaggggacgcccgcccgggtggcg
ggcgcagccgggagtgccacggcgccctatctggcccgggccctggacggcggggagcgc
cggtga

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (19)   

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