KEGG   Streptomyces lavendulae subsp. lavendulae: SLAV_08055
Entry
SLAV_08055        CDS       T05314                                 
Symbol
alkA
Name
(GenBank) DNA-3-methyladenine glycosylase 2
  KO
K13529  AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
Organism
slx  Streptomyces lavendulae subsp. lavendulae
Pathway
slx03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:slx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    SLAV_08055 (alkA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:slx03000]
    SLAV_08055 (alkA)
   03400 DNA repair and recombination proteins [BR:slx03400]
    SLAV_08055 (alkA)
Enzymes [BR:slx01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.21  DNA-3-methyladenine glycosylase II
     SLAV_08055 (alkA)
Transcription factors [BR:slx03000]
 Prokaryotic type
  Helix-turn-helix
   AraC family
    SLAV_08055 (alkA)
DNA repair and recombination proteins [BR:slx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     SLAV_08055 (alkA)
SSDB
Motif
Pfam: AlkA_N Ada_Zn_binding HTH_18 HhH-GPD HTH_AraC
Other DBs
NCBI-ProteinID: ATZ23510
UniProt: A0A2K8PBM1
Position
1781319..1782794
AA seq 491 aa
MYTDTDRCVRAVQSKDARFDGWFFTAVRTTGIYCRPSCPAVPPKVENMSFLPSAAACQQA
GYRACKRCRPDTSPGSPEWNARADAVARAMRLIQDGVVDREGVTGLATRLGYSTRQVERQ
LGAELGAGPLALARAQRAQTARLLIETSELPMGDVAFAAGFASIRNFNETVREVFALTPG
ELRARAARAGRSEPRVPGTITLRLPYRAPLNPDNLFGHLAATAVPGVEEWRDGAYRRTLR
LPYGTGVVALTPGPEHIGCRLALTDLRDLTIAISRCRWMLDLDADPEAVDGQLRTDPLLA
PLVDKAPGRRVPRTVDAAEFAVRAVLGQQVSTAAARTHAARLVTAYGEPVEDPQGGLTHL
FPGPEALAGLDPETLSMPRSRRTTLTTLVGALADGSLPLGIDSDWEAARAALNALPGFGP
WTTEIIAMRALGDPDAFLPSDLGVRRAAQGLGLPSTPAALTARAAGWRPWRAYAVQYLWA
TEDHAINHLPV
NT seq 1476 nt   +upstreamnt  +downstreamnt
atgtacaccgataccgaccgctgcgtcagggccgtgcagtcgaaggacgcccgtttcgac
gggtggttcttcaccgcggtccggaccaccgggatctactgccggcccagctgcccggcc
gtgccccccaaggtcgagaacatgagcttcctgcccagcgccgcggcctgccagcaggcc
gggtaccgggcctgcaagcggtgccgcccggacacgagccccggctcgcccgagtggaac
gcccgcgccgacgccgtggcccgggccatgcggctgatccaggacggggtggtcgaccgc
gagggggtcaccggcctggcgacccggctcgggtactccacccgccaggtcgagcggcag
ctcggcgccgagctgggggccggcccgctcgcgctcgcccgcgcacagcgtgcgcagacc
gcccggctgctgatcgagacctccgagctgccgatgggcgacgtggccttcgccgccggg
ttcgcctccatccgcaacttcaacgagacggtgcgcgaggtcttcgccctcacccccggc
gaactgcgggcgagggccgcgagggccgggcgcagtgagccccgggtgccggggacgatc
actctgcggctgccgtaccgggccccgctgaaccccgacaacctcttcgggcacctggcc
gccacggccgtgcccggggtggaggagtggcgggacggggcctaccgccggacgctgcgg
ctcccgtacggcaccggggtggtcgcgctcaccccggggcccgagcacatcggctgccgg
ctggccctgaccgacctgcgggacctgaccatcgccatcagccgctgccgctggatgctg
gacctggacgccgacccggaggccgtggacggccagctccgcaccgatccgctgctggcc
ccgctggtggacaaggccccggggcggcgggtgccgcgcaccgtggacgccgcggagttc
gccgtgcgggcggtgctgggccagcaggtgtcgacggcggccgcgcgcacgcacgcggcc
cgcctggtgaccgcgtacggggagccggtggaagatccccagggcgggctgacgcacctc
ttcccgggcccggaggcgctggccggcctggacccggagaccctgtcgatgccgcgcagc
cgccgcacgacgctcaccaccctggtcggggcgctggcggacggctcgctgccgctgggc
atcgacagcgactgggaggcggcccgcgccgcgctgaacgccctgcccggtttcgggccg
tggaccacggagatcatcgcgatgcgggcgctgggcgacccggacgcgttcctgccgtcc
gacctgggggtccggcgggcggcccaggggctggggctgccgtccaccccggccgccctg
accgcccgggcggccgggtggcggccctggcgggcgtacgccgtgcagtacctgtgggcc
accgaggaccacgccatcaaccacctccccgtatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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