KEGG   Solanum lycopersicum (tomato): 101245055
Entry
101245055         CDS       T02665                                 
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
  KO
K12875  apoptotic chromatin condensation inducer in the nucleus
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03013  Nucleocytoplasmic transport
sly03015  mRNA surveillance pathway
sly03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101245055
  09122 Translation
   03013 Nucleocytoplasmic transport
    101245055
   03015 mRNA surveillance pathway
    101245055
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sly03019]
    101245055
   03041 Spliceosome [BR:sly03041]
    101245055
Messenger RNA biogenesis [BR:sly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     101245055
Spliceosome [BR:sly03041]
 Complex C
  Other components
   EJC/TREX
    101245055
SSDB
Motif
Pfam: RSB_motif SAP
Other DBs
NCBI-GeneID: 101245055
NCBI-ProteinID: NP_001334103
UniProt: A0A3Q7G7U1
Position
4:complement(59715265..59723504)
AA seq 862 aa
MSDYPVLDNRPINKWKVAELRDELKRRNLTTKGLKDDLVRRLNEAICIEMEAAAVKESKD
DDRDIDPASGLEDTEPEPDPVKLVDDVLEHPPIEVTHGSEHITDATCGLEEAQPNSNPDI
LVDNVQKQKQDEFNSIDSDVARATTKNCLVGIDQNKVMDEVATGGNDDVLKHHQNEVNEI
DGDASASTKNALVEIDQNKVLDEVATGDTAAGESDRLEAPVGSTSVINEIASNKEHKVID
SSQDDYVADGVSEVWDGSIPVSSTRQDVEDMKISSYEGVLEDNLRGQENDVEVTPVTSEE
ALKNHSIKLDNEGLKLSDMDAEPDMSNPATQVYEVNPNLGSQVKSDSFSTDTLTINENKD
LNDNLNADNVKLETEVVRQEMELQSSSKDLSGVGSSHPLDGQMPHEMQGLVGETDDDKSS
DVKFSMKNDNADQVSVDVSKVEHDFESKTPNNSEQPDIQFEKARTLGDVEEPSLSPMKIE
ASAEDTHDLAVSGDDRKDFSKIADVVDGENMEKINLDQSSADDSMEEDVVETKHVDFDHI
SKKENDKTDEFITGMTEEPKVRPSGSSDAMQLDIPSEKVASQETKDKSLALSEKRKFQDE
AGGGSKEPAKRQRRWNTEKTAEPQNSSIALTKKVVQPTPIKPILGRTNSTVGGDSPKERF
VPKSSKTATTSLKIENFLRPFTLKAVQELLARTGEVCSFWMDQIKTHCYVTYSSVEEATE
TRNAVYNLQWPPNGGRLLVADFVDPQQVQTKIEGREPASPPKVTSPAVPASSFVQTPPAQ
QQGRKQQAELEHSLTRQPPPAPPSAPPTKEMLPSPVADKNDPPIVTLDDLFRKTKVTPRI
YYLPLTDEEVAKKLAIRGNAKP
NT seq 2589 nt   +upstreamnt  +downstreamnt
atgtcggactaccctgtgcttgataatcgtccaattaataaatggaaagtagcagaatta
agggatgagcttaagaggaggaacttaacgacaaaaggtttgaaggatgatctggttaga
cgattaaatgaagctatctgcatagaaatggaagctgctgcagttaaagagagtaaggat
gatgatcgtgacattgatcctgccagtggtcttgaagatactgaacccgagcctgatcct
gttaaattggttgatgatgttctggagcatcccccaattgaagtcactcatggttctgaa
catattactgatgctacatgtggtcttgaagaagctcaaccaaatagcaatcctgatata
ttggttgataacgttcagaagcaaaaacaagatgaatttaacagtattgacagtgatgtt
gctagggccaccaccaagaattgtcttgttggaatagaccagaacaaagtcatggatgag
gttgcaactggaggtaatgatgatgttctgaagcatcaccaaaatgaagttaacgaaatt
gatggtgatgccagtgctagcaccaagaatgctcttgttgaaatagaccagaataaagtc
ttggatgaggttgcaactggagatactgctgctggagaatcagaccgtttggaggcaccg
gttggtagcactagtgttataaatgagattgcatctaataaggaacacaaggttattgat
tcttctcaggatgattatgttgctgatggggtatctgaagtctgggatggttctattcca
gtcagtagcactagacaggatgttgaggatatgaaaatttcatcttatgagggagtgctt
gaggacaaccttaggggacaagaaaatgatgtggaggtaaccccagtaacatcagaggaa
gcattgaaaaaccacagcattaagttggataatgagggtctgaaactctcagacatggat
gctgagccagatatgtccaatccagccactcaggtatatgaggtcaaccctaatttaggg
tctcaagtaaaatctgactcattttctactgatactttgaccattaatgaaaataaagat
ttaaatgataatttgaatgctgataatgtcaaattagaaactgaagttgttaggcaagag
atggagctgcagtcatccagcaaagacctatcaggtgttggtagctctcatccattggat
ggtcagatgccacatgagatgcagggtcttgttggagaaactgatgatgacaaatcttca
gatgtgaaatttagcatgaaaaatgacaatgcagatcaggtttctgttgacgtttccaag
gtagagcatgatttcgagagtaagactccaaataatagtgagcaacccgatatacagttt
gaaaaagctagaactttaggtgatgttgaagagcctagtttgtcacccatgaaaattgag
gcatctgcggaagatacacacgatcttgctgtttctggtgatgatagaaaagattttagc
aagatagccgatgtagtggatggtgagaatatggaaaagattaacttggatcagtcttct
gctgatgattccatggaggaggatgtagtagagacaaaacatgtggattttgatcatatt
tctaagaaagagaatgacaagactgatgagtttattacgggaatgacagaagagcccaaa
gttcgaccaagtggttcttctgatgcaatgcagctagacattccttctgagaaggttgcg
tctcaagaaactaaagataagtctcttgctttgtcagagaagagaaagtttcaagatgaa
gcaggaggtgggagtaaagagcctgcaaaaaggcagcgtagatggaacactgagaagact
gctgaaccccaaaattctagtattgctttaacaaagaaggttgttcagcccactcctatc
aaacccatccttggcaggactaactctacagttggtggggattcacccaaggagcgcttt
gtaccaaagtcttcaaaaacagccactacttctctcaaaattgagaatttcttgcggcct
tttacgctgaaagctgtgcaagagctccttgcaaggactggtgaagtctgcagtttctgg
atggaccagataaagacccattgctatgtcacgtattcttcggtagaagaagccacagag
accagaaacgcggtgtacaatctccaatggccaccaaatggtggtcgtctcctggttgca
gattttgttgatcctcaacaggtgcaaaccaagatagagggtcgggaacctgcttctcca
ccgaaagttaccagtcctgctgtgcctgcttcatcctttgttcaaacaccacctgctcag
cagcagggtcgcaaacaacaagctgagttggaacattcactcacacgccagccacctcct
gctcctcctagtgctcctccaacaaaagagatgctgccttcacctgttgctgataaaaat
gatccccctattgttactttggatgacctcttcagaaagaccaaagtcactccccgtatc
tattatttaccgctgacagatgaagaagttgctaaaaagcttgccattaggggaaatgct
aagccttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (53)   

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