KEGG   Solanum lycopersicum (tomato): 101246422
Entry
101246422         CDS       T02665                                 
Name
(RefSeq) RNA pseudouridine synthase 2, chloroplastic isoform X1
  KO
K06180  23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Organism
sly  Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:sly00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sly03009]
    101246422
Enzymes [BR:sly01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.23  23S rRNA pseudouridine1911/1915/1917 synthase
     101246422
Ribosome biogenesis [BR:sly03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    101246422
SSDB
Motif
Pfam: PseudoU_synth_2 S4
Other DBs
NCBI-GeneID: 101246422
NCBI-ProteinID: XP_004238386
Position
4:65863206..65866429
AA seq 436 aa
MVALNTTSFSLLPQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKL
EETVDSKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDC
TIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPT
VSFPGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVV
AKNEHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPK
SGKSRHAVSRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNM
ALSLLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILS
ELRAIKTEKVTHPNYY
NT seq 1311 nt   +upstreamnt  +downstreamnt
atggtagcactcaatactacgtcgttctctttgcttccacaaaacccaaaaccaatttct
ctttctagggtttcaagcttcatttgcagagcatttaccaaattccccggagactcagat
tccgacgactcaccggatgaaattcccggccggaggtccaattactccggcgtcaagctc
gaagaaacagttgatagcaaaaccggaaagctccgactagattcatgggtcagttcccgg
atcgacggagttagtagagctcgtgttcagtctagcatccgctctggtcttgtttccgtc
aatggacgcgtcactgataaggtttcacatatggtaaaaggtggagataaggttgattgt
acaatagctgatttgaagcctttaagagctgaaccagaggatataccattggatatagtg
tatgaagatgagcatgttcttgttgttaacaagcctgctcacatggtagttcatcctgca
ccaggaaatgctactggaacgcttgtaagtggtattcttcatcactgcagtcttcctact
gtttcatttccgggtgaggaagtgctttctgatggggaagatgcttctgatgatgagttg
aacatattttctcccaatcgaagtcctaattatgatgactcttctgttatgtgtgagtca
tctgttaggccaggaattgtgcataggttagacaaaggaacaagtggattgcttgttgta
gcgaagaacgagcattcccttgccgatctagctgagcagtttaagaaacataccattaag
agagtatatgtcagcattacttgtggggtaccagcttcagtcgcaggacgcgttgatatt
ccaattggtcgtgattctaataacagaatccgcatggctgctatccctggaacacctaaa
agtggaaaatctcgtcatgctgtcagtaggtataaagtaatcgaaaaacttgctgggggt
ggctcggcattggttgaatggaggctagaaactggtcgcactcatcagatacgtgctcat
gcgaagcacctaggtatacctcttatgggtgatgaagtgtacggaggtacgaagaacatg
gccctttcgcttcttcagcctaaaacaccaccaatgtttcatggggaactttcacaattg
gtgtctcaaattgacagaccttgcctccatgctttaaccctcggatttaggcatccattc
acaggcgagaatatacactttacgcggttaccccctcctgattttgctgagatattaagc
gagctacgtgccattaaaactgagaaggtaactcatccaaactactactaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (22)   

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