KEGG   Solanum lycopersicum (tomato): 101252128
Entry
101252128         CDS       T02665                                 
Name
(RefSeq) E3 ubiquitin ligase PQT3-like
  KO
K15541  protein MPE1
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    101252128
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sly03019]
    101252128
Messenger RNA biogenesis [BR:sly03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     101252128
SSDB
Motif
Pfam: DWNN zf-CCHC_2 U-box zf-C3HC4 zf-CCHC zf-C3HC4_2
Other DBs
NCBI-GeneID: 101252128
NCBI-ProteinID: XP_004231445
Position
1:complement(97318456..97319583)
AA seq 375 aa
MAVYIKYKSCKDYDSIPILDHFISVGNLKSKIFESKRYGWGKDFDILLTNLQTNEDYVDH
ATLIPRSTSVLIRRVAGLPCFPIVIKEEPKQVLCKQEEVHSVKKESKYSQDIDYNDFGDD
VYVIPKIAVPIQLGSPESSCSSSIIKNSVGNISYNNTRSAGSSVGQGRTEWKNPPPGPGY
VCHRCKVPGHFIQHCPTNGDPNYDIKKLQPPSASVAVLRPYVAADTKVVQGSSSKHSYTA
IPPELHCSLCKGLMKDAVIASKCCFSSFCDKCIRNYIMSNSVCVCGATNILVDALLPNLT
LRATVNRFLQSNSTTSSESCRTVEEFPRAVEEVNMKKRKNSNDAANMQWGVETRNLGFKR
NKCEMSSEFSSVITY
NT seq 1128 nt   +upstreamnt  +downstreamnt
atggcagtgtatatcaagtataaaagttgtaaggattatgattcgataccaattcttgat
cattttatttctgtgggcaatctgaaatcaaagatatttgaatccaagcgttatggttgg
ggtaaagatttcgacattcttctcaccaacctacaaactaacgaagattatgttgatcat
gccaccttgattccaagaagtacaagtgttttgattcgtcgcgttgctggattaccttgc
ttccccattgtaatcaaagaggagcccaagcaagtgctgtgtaaacaggaggaggttcat
tcagttaaaaaagagtccaaatattctcaagatattgattacaatgattttggcgatgat
gtgtatgtaattccaaaaatagcagtgccaattcaattaggcagtccagagtccagttgt
tctagtagtataatcaagaattcagtaggaaacatatcgtataataacacaagatcagct
ggctctagtgttggacaaggtagaacggaatggaaaaacccaccaccaggaccagggtat
gtgtgtcatcgatgcaaggtgcctggccatttcattcagcattgccctacaaatggtgac
cccaattatgacatcaagaaactgcagccacccagtgcaagtgttgctgttttgaggcct
tatgtggcagctgatactaaggtggttcaaggatcttcttcaaagcattcctatacagct
ataccaccagagcttcactgctcattgtgtaaaggattaatgaaagatgcagttatagca
agtaaatgttgttttagtagtttctgcgacaaatgcataaggaattatattatgtctaac
tctgtttgtgtatgtggggctacaaatatacttgttgatgctctcttgcctaatttgact
ctaagagccacagtaaacagattcctacagtctaatagcactacttcttcagagtcttgt
aggacggtagaagagtttccacgagctgttgaagaagtaaacatgaagaaaaggaagaat
tcaaatgatgctgctaacatgcaatggggtgttgaaactagaaatttaggttttaaaagg
aataagtgtgagatgagcagcgagttttcaagtgtaattacttattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (33)   

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