KEGG   Solanum lycopersicum (tomato): 101253227
Entry
101253227         CDS       T02665                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101253227
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sly03019]
    101253227
   03036 Chromosome and associated proteins [BR:sly03036]
    101253227
Enzymes [BR:sly01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     101253227
Messenger RNA biogenesis [BR:sly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     101253227
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     101253227
Chromosome and associated proteins [BR:sly03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    101253227
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 DUF6610 TFIIA
Other DBs
NCBI-GeneID: 101253227
NCBI-ProteinID: XP_004229903
Position
1:85737602..85747243
AA seq 498 aa
MNPRPRFQSPGMGGRGGGGGGSMHPNTNPNFQHRNPQQYIQRGPAPYQQPQPQQQQQQHF
QNQQTQQWLRRNQLPSPDSTVAEVEKNVQSEAVDQSSQEWKARLKIPQPDTRYRTEDVTA
TKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTASFCI
PALEKIDQDKNVIQAIILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLY
QPVHLLVGTPGRILDLAKKGVCVLKDCSMFIMDEADKLLSPEFQPSIEQLICFLPANRQI
LMFSATFPVTVKDFKERYLHKPYVINLMDELTLKGITQFYAFVEERQKIHCLNTLFSKLQ
INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL
FTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVSLITFEDRFNLYRIEQEL
GTEIKQIPPQIDQAIYCQ
NT seq 1497 nt   +upstreamnt  +downstreamnt
atgaatccgagaccaagatttcaatcgccagggatggggggccgtggaggcggcggcggc
gggagtatgcatccaaatactaacccaaactttcaacacagaaatcctcagcagtacatt
cagagagggccagcaccctatcagcagccgcagccgcaacaacaacaacaacagcatttt
cagaatcagcaaacacagcagtggcttagaagaaaccagttgccatctcccgattccacc
gttgccgaggttgaaaagaatgtacagtccgaagccgttgaccagagttcacaagaatgg
aaggctagattgaagataccacaacctgatactcgatacagaacagaggacgtgacagca
actaagggaaatgaatttgaagactactttcttaagcgcgaactgcttatgggaatttat
gaaaagggatttgagagaccatcgccaatccaagaggagagcattccaattgcgctaact
ggtagtgacatattggctagggccaaaaatggaactgggaagactgcttccttctgcatt
cctgctttagagaaaattgatcaagacaagaatgtgattcaagctattattcttgtccca
actcgagaattggccctccaaacatctcaagtttgtaaagaactcgggaagcacctaaaa
attcaagtcatggttaccactggggggactagcttaaaggacgacataatgagactgtat
cagccagttcatttacttgttggtactcctggaagaattcttgaccttgcaaaaaagggt
gtgtgtgttttgaaagattgctccatgtttatcatggatgaggctgataagcttctttca
ccagaattccaaccttccatcgagcagctgatctgcttcctacctgcaaatcgccagatt
ttgatgttttctgcaacatttcctgttactgtcaaagactttaaagaaagatatttgcac
aagccatatgttatcaacctcatggatgaacttacactcaagggtataacacaattttat
gctttcgttgaagaaagacagaagattcactgccttaacactctcttctcaaagcttcaa
attaaccaatcaattattttttgcaactctgtaaatcgtgtggaacttcttgccaaaaag
attactgagctgggctattcatgcttctacattcatgctaagatgcttcaagatcataga
aacagggtgtttcatgacttccgcaatggtgcctgcaggaaccttgtttgtactgatttg
tttactagaggaatagatattcaagcagttaacgttgttatcaattttgatttccctaag
aactcagaaacgtatttgcacagggttggacgatcagggagatttggacaccttggtttg
gctgttagcctgattacttttgaggatcgcttcaatttgtatagaattgaacaagaatta
ggaacagagatcaagcaaatccctccacagatagatcaagctatatattgtcagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (25)   

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