KEGG   Solanum lycopersicum (tomato): 101255780
Entry
101255780         CDS       T02665                                 
Name
(RefSeq) WD repeat-containing protein 43 isoform X2
  KO
K14546  U3 small nucleolar RNA-associated protein 5
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    101255780
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sly03009]
    101255780
Ribosome biogenesis [BR:sly03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    101255780
SSDB
Motif
Pfam: Utp12 ANAPC4_WD40 PQQ_2 Nup160 PAN_3
Other DBs
NCBI-GeneID: 101255780
NCBI-ProteinID: XP_004235970
UniProt: A0A3Q7FUD3
Position
3:67334085..67341405
AA seq 626 aa
MAREKLKSLVTSFTTGGEYLAVLSPDGTVRVWNTSSGSLFGQWKPENSGDSFSYMACCII
GKKHRKEQCLLVALASDDGTVLTVDISAKLVRWRKDGALPSGAAGLFFVGKGRRVNAVAA
NGLVLEMNSETGEVNKEFKVSKKSISSVAHSTDQKIIAVASDKLRFLSPESGKELLKFSP
DSATAQHIWLSNDAQFAITVGFGEKQLQVWKLDFGNRAADYGHVVSMKHPPVMVECRNKC
KGEDGMVVLATSEKGVCYVWNFESVTDEAAKPIKISVKPSKGETDGKARKNLLPVIAARL
HALDRDAHLRALIAYGSVESPEFTSVGISNPGEDIVIAAGDQTEKAVASVQENGHAKKGG
DMEVEGANLIQRSKVTNKRPASDLDVTGEATITDNGNGEPIDGVQIDDFSEPTMGEKLAM
LHLEDNSEDKSNKNLEFALQKKPPSADSVHVLLKQALHADDRALLIDCLYRQDEKVIANS
VSLLNPSDVLKLLQSLLSIIQSRGAVLACALPWLRSLLLQHASGIMSQESSLLALNSLYQ
LIDARLSTLHQALQLSSSLELLHAGTIDDGDDEEDGAIQPIIYEDNDDSEEEGSEVTMET
ESIPDVEEPEAFSDVSDREGSDGMSE
NT seq 1881 nt   +upstreamnt  +downstreamnt
atggcgagggagaagctaaaatccctagttacatcattcactaccggcggtgagtatctc
gctgtattgtcgcctgatggaactgttagagtttggaacacaagtagtggaagcttattt
ggtcagtggaaaccagagaattctggagacagtttctcttacatggcatgctgtattatt
ggaaagaagcacagaaaagaacaatgtctattagtagctcttgcctcagatgatggaact
gttttaacagttgacatttctgctaaattggtaaggtggagaaaagatggagcccttcct
agcggagctgctggtctgttttttgtgggcaaaggtcgcagggttaatgctgttgctgcg
aatggtttagtacttgagatgaactccgaaactggagaagtcaacaaagagttcaaagtg
tcaaagaagtccatttcttcagtagctcattcaactgaccagaaaattatagctgtggcc
agtgataagttgcgatttctaagtccagaaagcgggaaagagttgctgaagttttctcct
gattcagctactgcacaacatatttggctatctaatgatgctcaatttgctattactgtg
gggtttggcgagaaacaacttcaagtgtggaaacttgattttgggaatagggctgcagat
tatgggcatgttgtttccatgaaacatcctcctgtaatggttgaatgcaggaataagtgc
aagggagaagatggtatggttgtccttgcaacatcagagaaaggtgtttgttatgtttgg
aactttgagtccgttactgatgaagctgcaaagccaattaagatctcagtaaaacccagc
aaaggggaaacagatggaaaagctagaaagaatcttttgcccgtaatcgctgcaagattg
catgctttagatagagatgcacatttaagagccttgattgcttatggttctgttgaatcc
ccagagtttacatcagtaggcatttcaaatccaggggaggatatcgtcatagcagcaggg
gaccagaccgaaaaagcggttgcttcagttcaagaaaacggccatgccaaaaaaggtgga
gatatggaagttgaaggtgctaacttaatccagagaagcaaagtgacaaacaaacgacca
gcatctgatctggatgttactggtgaagcgactattacagataatggtaatggtgaacct
attgacggagttcagattgatgattttagcgagccaaccatgggcgagaaactcgcgatg
ctccatttggaagacaacagtgaagataaaagcaacaagaatctagaatttgctcttcaa
aagaagcctccaagtgctgattcagttcatgttctgctgaagcaagcacttcacgctgat
gatcgagcacttttgatagattgcttatacagacaggatgagaaggtcattgcaaattca
gtctctcttttaaatccttcagatgttctcaagcttttacagtcactcttatcaattatc
cagtcaaggggtgctgtattggcttgtgcccttccttggctgcgaagtttgcttctccaa
cacgctagtggaataatgtcccaagaatcctctttgcttgcactcaactctttatatcag
cttattgatgccagactttcaactctccaccaagcccttcagttatcgagctccttagaa
ttgcttcacgcagggactattgatgatggtgatgatgaagaagatggtgccatacagccc
atcatatatgaagataacgatgacagtgaggaggagggttctgaagttactatggaaaca
gaaagcatcccagatgttgaggaacccgaagctttcagcgacgttagtgatcgcgaagga
agtgatggcatgagcgagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (31)   

Download RDF
DBGET integrated database retrieval system